Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122854g00002 ATGGAGATGGAGATGAATGGGGTTACCACCACCAACACCATCACTGCCACCACCACCACCACTAGTGAGTCCCAAAAGAAAGCGAGGCTTGCAATTCTGGAACTAGCACACATGGTGAGTGTTCCAATGTCACTGGTGGCAGTCATCAGACTCAAGGTCCCCCAAGCCATATGGCAAGGCGGTTCCAACACTCCCATCTCCGCCTCTCAAATTCTCGCCCACATTTGCCCCCACGGTGGTGGCTATGACGCTGAGAACCTTCAGCGCATTCTCCGATTACTCGCTAGCTATAACATATTCGTGGAACACCTTAATAGCAGAGGTGAAAGGAAGTACTCACTCACTGAGATTGGCAAAACTCTCGTTGATGATACTGAAGGTTTGTCCTATGCATATTACATGCTCCAGCACCATCAGGATGCATTGATGCAAGCATGGCCAGTGATGGAGGAGGCAGTGAAGGATCCAACAGCGGAGCCATTCAAGAAAGCAAACGGAGAGGGTGCAATATCATATTATACAAAGAGACCTGATGAGTTGAAATTGGCTGTAAAAGCCTTATGTGGAATGTCCATACCTTTGATGAGGGAGATCTTGGATTCCTATGATGGCTTCCAAGGTGTGGAGACATTGGTTGATGTCGGTGGCAACAATGGTATCTCTTTACGTAGCATCATGGAAAAGTACCCAAATGTGAGTAAGGGCATCAACTTTGATCTTCCAGAAATGGTAGCCTCTGCACCACATATTCCAGGTGTAACTCATGTGGGTGGCGACGCGTTTGAATCTGTTCCTAGTGGAGATGCAATTTTTATAAAGTGGGTACTATTAGCGTGGACTGACGAGGAATGCAAGAAGGTTTTCCAGAATTGCTATAAGGCGCTTCCTGCCAATGGAAAAGTGATCGCCTGCGAACCGGTGGCGCCGGAGATGACGGATGAGAGCCAGAGAACAAGAGCATTGCTTGGTGGAGACATATTCATAATGACAATGTATAGAACTAAGGGGAAGCACAGGACTGAACAGCAATTCAAAGAGCTTGCTACTTCTGCTGGCTTTTCTCGTTTCCATGCTTTCTATGTTGATCCTTACATGGCTGTGCTTGAATTTCACAAATCATCAATTTAA 1128 0.4663 MEMEMNGVTTTNTITATTTTTSESQKKARLAILELAHMVSVPMSLVAVIRLKVPQAIWQGGSNTPISASQILAHICPHGGGYDAENLQRILRLLASYNIFVEHLNSRGERKYSLTEIGKTLVDDTEGLSYAYYMLQHHQDALMQAWPVMEEAVKDPTAEPFKKANGEGAISYYTKRPDELKLAVKALCGMSIPLMREILDSYDGFQGVETLVDVGGNNGISLRSIMEKYPNVSKGINFDLPEMVASAPHIPGVTHVGGDAFESVPSGDAIFIKWVLLAWTDEECKKVFQNCYKALPANGKVIACEPVAPEMTDESQRTRALLGGDIFIMTMYRTKGKHRTEQQFKELATSAGFSRFHAFYVDPYMAVLEFHKSSI 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122854g00002 375 PANTHER O-METHYLTRANSFERASE 35 359 IPR016461 GO:0008168
Stsc122854g00002 375 SUPERFAMILY "Winged helix" DNA-binding domain 24 124 IPR036390 -
Stsc122854g00002 375 PIRSF O-mtase 9 372 IPR016461 GO:0008168
Stsc122854g00002 375 Pfam O-methyltransferase domain 146 354 IPR001077 GO:0008171
Stsc122854g00002 375 Gene3D Vaccinia Virus protein VP39 127 372 IPR029063 -
Stsc122854g00002 375 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 127 369 IPR029063 -
Stsc122854g00002 375 Gene3D - 13 126 IPR036388 -
Stsc122854g00002 375 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 33 372 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122854g00002 Stsc-Chr122854 3946 8707 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122854g00002 21 372 Monolignol Biosynthesis Gene Families AT3G53140 61.972 4.20e-166 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122854g00002 - - ccaj:109819366 520.39