Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122807g00001 ATGAGGCATTTCAGGTTGTTGAAGAAATTGGGACGCGGAGACATTGGAAGTGTGTATCTAGCTGAACTGAGCGGCACGAGGACTTCTTTTGCCATGAAGATAATGAACAAGACAGAGCTAGCGAATCGCAAGAAGCTCGTGAGGGCTCAGACCGAGAGAGAGATATTGCAGTCCTTGGATCATCCTTTTCTGCCCACATTGTATACACATTTCGAGACGGAGACATTCTCCTGCTTGGTAATGGAGTTCTGCCCTGGTGGCGACTTGCACGCCCTCAGGCAAAGGCAACCCGGGAAGTATTTCTCGGAGCATGCTGTCAGGTTTTATGTGGCAGAAGTTCTCCTTGCTTTGGAGTATTTACATATGCTTGGGATCATCTACAGAGACCTTAAACCCGAGAACGTGTTAGTGAGGGAAGACGGTCATATAATGCTGTCAGATTTCGATCTCTCTCTAAGGTGCACGGTCAGTCCAACTTTAGTAAAGTCGTCAAACTCTATCTTAGAGACGAAGAGCTCAGGATACTGCATTCAGCCTTCTTGCGCCGAACCAACATGTTCAATGCAGCCAGATTGCATCCAACCTGCATGCTTCTCGCCACGGTTTCTTTCCAGCAAATCCAAGAAGGGAAAGAAGTACAGGCCAAAGAATGACATGCATCATCAGGTGACCCCTCTTCCCGAGCTTGTAGCCGAGCCAACAAATGCCAGATCGATGTCCTTCGTTGGCACACACGAGTACTTGGCACCTGAGATCATTAAGGGCGAAGGCCACGGCAGTGCTGTGGACTGGTGGACATTTGGGATATTCCTATACGAGCTATTGTTTGGCCGGACACCATTCAAGGGCTCAGCGAACCGAGCAACGCTGTTTAACGTGGTTGGGCAGCCCTTAAGGTTTCCAGAGTCTCCTACTGTCAGTTTTGCTGCCAGGGACTTGATTCGGGGCTTACTCGTGAAAGAGCCTCAGCATCGTCTTGCCTATAGACGCGGAGCCACCGAAATCAAACAGCATCCGTTCTTTCAGAATGTTAACTGGGCGCTGATCCGGTGCGCGAATCCCCCCGAGGTGCCGAGACTCATGAAACCAACCCCAATTGATCAAATGGACCCTGGTTTGAATCCTTCTGGTAATTATTTAGACATTGATTTCTTTTGA 1158 0.4914 MRHFRLLKKLGRGDIGSVYLAELSGTRTSFAMKIMNKTELANRKKLVRAQTEREILQSLDHPFLPTLYTHFETETFSCLVMEFCPGGDLHALRQRQPGKYFSEHAVRFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCTVSPTLVKSSNSILETKSSGYCIQPSCAEPTCSMQPDCIQPACFSPRFLSSKSKKGKKYRPKNDMHHQVTPLPELVAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLFNVVGQPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQNVNWALIRCANPPEVPRLMKPTPIDQMDPGLNPSGNYLDIDFF 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122807g00001 385 ProSiteProfiles Protein kinase domain profile. 4 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc122807g00001 385 PANTHER FLIPPASE KINASE 1-RELATED 1 360 - -
Stsc122807g00001 385 Pfam Protein kinase domain 238 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc122807g00001 385 Pfam Protein kinase domain 5 159 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc122807g00001 385 FunFam serine/threonine-protein kinase D6PK-like 236 359 - -
Stsc122807g00001 385 CDD STKc_phototropin_like 2 363 - -
Stsc122807g00001 385 SUPERFAMILY Protein kinase-like (PK-like) 2 368 IPR011009 -
Stsc122807g00001 385 FunFam serine/threonine-protein kinase D6PK-like 88 155 - -
Stsc122807g00001 385 SMART serkin_6 4 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc122807g00001 385 Gene3D Phosphorylase Kinase; domain 1 1 89 - -
Stsc122807g00001 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Stsc122807g00001 385 Gene3D Transferase(Phosphotransferase) domain 1 90 358 - -
Stsc122807g00001 385 FunFam Serine/threonine-protein kinase D6PK-like 2 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122807g00001 Stsc-Chr122807 6336 9702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122807g00001 2 385 AGC Kinase Gene Family AT3G27580 74.074 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Stsc122807g00001 Pkinase 3.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122807g00001 K08286 - gmx:100810909 716.072