Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122799g00001 ATGTATAGAATCATTTCCACCCCGGCGTCAAAGTTCCGCCAGTTCGGGCGACTCCGATCAAGAACTAGCAACACAAGCGCCGCAAACTCTGACGAGGAGAACGCATTCCAGATCCTATGGCGCTACCAGATCCTAGACCCGGACAGCGACATAGTTGCGTATTGGAACAGGGTGTTCCTCGTGGCAAGTCTCCTCGCGCTGTTCGTCGACCCTCTTTACTTCTTCCTCCCCACGGTGGGCGGCACCGCCTGCCTCAAGGCGGACCCCAGGCTCAGCATCATCGTCACCATCATGCGAACCTTTGCCGACCTCTTCTACATCATCCACATGGTCTTGAAGTTCCGCACCGCCTTCGTTGCTCCCAATTCTAGAGTCTTCGGCCGTGGTGACCTTGTCATGGACCCTCACGAAATCGCCATGCGCTACTTGAAGTCCGATTTTGTCATTGACCTTGCTGCCACTATTCCTCTCCCCCAGATTGTGATTTGGCTGGTGATTCCAGCAAGTAGTTCGTCAACAACTGATCATGCCAACAACACACTTGCACTTTTTGTTCTAATTCAGTATATTCCTAGGCTATTTCTTATCTTCCCTTTGAACCAGCGTATTACGAAAACCACTGGTGTTATTGCCAAAACCCCTTGGATTGCAGCAGCCTACAATCTTATTCTCTACATGCTAGCTAGTCATGTTACAGGAGCAACTTGGTATCTATCCTCAATTGGGAGACAATTCAACTGCTGGAGAGCAGAGTGCGAAAGAGAGAATAGATTAAAAACCATAACGTGCTTGCCTACTTATCTTGATTGTAACAGTATTGGTTTACCTGAAAGACAACGTTGGCTAAATGTCACTCAAATTATTACCAGATGCGATCCCAAGGCCAAGCTCAATGTCAAGTATAAGTTTGGCATGTTTGCAGATGCTTTTCTCAATGATGTTGTTACTACAAATTTTGTTGAAAGATACTTCTATTGTCTATGGTGGGGATTAAGAAATTTAAGCTCATATGGACAGAATTTGGACACAACCACATACCTCCCAGAGACATTCTTTTGCATCTTCTTATGTCTTGCTGGATTAATTCTCTTCTGTCTTTTGATTGGAAACATGCAGACATACTTGCAATCAATGTCAGTTAGACTTGAAGAATGGAGGATTAGGAAGAACGATACCGAGCAATGGATGAGACATAGACAATTGCCTCCAGATTTGCAGGAACGTGTTCGTCGCTTTGTTCAGTATAAATGGCTTGCCACCAGAGGAGTGAATGAAGAGTCCATACTACTTGATTTGCCTTTGGATCTCCGTCGTGAAATTCAACATCACTTGTGTCTCTCTCTGGTTCGACGGGTCCCTTTCTTCTCACAAATGGATGACCAGCTCCTTGATGCAATCTGTGAACGGTTGGTGTCATCATTAAGCACAGAAGGCACATATATATTCCGAGAGGGAGATCCAGTGGATGAAATGTTGTTTATCATTCGAGGACAATTAGAGAGTTCCACAACCAATGGAGGAAGGTCTGGTTTCTACAATTCTATCACACTTAGGCCCGGCGACTTTTGCGGCGAGGAGCTCCTGACATGGGCCTTATTGCCAAATTCCACCCTCAACCTGCCTAACTCTACTCGCACCGTCAAAGCTCTCTCCGAAGTGGAGGCTTTCGCGTTGGAAGCAGAGGATCTAAAGTTCGTAGCAAGTCAATTTAAGCGCCTTCATAGCAAGAAACTCCAGCATGCATTTAGGTACTATTCCCAACAATGGAGGACATGGGCTTCTTGCTTCATTCAGGCTGCATGGCGAAAGTTTCAGAAGAGGAAAGCAGCAAGGGAGTTGTCTTTGAGGGAGGGACAATTTTATATGACGCTCCCACCAGAGAGGGACAGCAGCAGCTATTATGGCGAAAGCGAAAGGGATCAAAGCGTAGGATCATCATCGTCGCCCGGGAGAATGAAAAGGGTTCAGAACCTTAACACAACCATTTTGGCTTCAAGGTTTGCAGCCAATACAAAGAAAGCCAAGGTTCGAGGCAGTGATCCTGTGCCACAGTTGTTCAAGCCTGATGAACCTGACTTCTCTGTAGATCGTGAGGAAGTTTAG 2103 0.4627 MYRIISTPASKFRQFGRLRSRTSNTSAANSDEENAFQILWRYQILDPDSDIVAYWNRVFLVASLLALFVDPLYFFLPTVGGTACLKADPRLSIIVTIMRTFADLFYIIHMVLKFRTAFVAPNSRVFGRGDLVMDPHEIAMRYLKSDFVIDLAATIPLPQIVIWLVIPASSSSTTDHANNTLALFVLIQYIPRLFLIFPLNQRITKTTGVIAKTPWIAAAYNLILYMLASHVTGATWYLSSIGRQFNCWRAECERENRLKTITCLPTYLDCNSIGLPERQRWLNVTQIITRCDPKAKLNVKYKFGMFADAFLNDVVTTNFVERYFYCLWWGLRNLSSYGQNLDTTTYLPETFFCIFLCLAGLILFCLLIGNMQTYLQSMSVRLEEWRIRKNDTEQWMRHRQLPPDLQERVRRFVQYKWLATRGVNEESILLDLPLDLRREIQHHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLSTEGTYIFREGDPVDEMLFIIRGQLESSTTNGGRSGFYNSITLRPGDFCGEELLTWALLPNSTLNLPNSTRTVKALSEVEAFALEAEDLKFVASQFKRLHSKKLQHAFRYYSQQWRTWASCFIQAAWRKFQKRKAARELSLREGQFYMTLPPERDSSSYYGESERDQSVGSSSSPGRMKRVQNLNTTILASRFAANTKKAKVRGSDPVPQLFKPDEPDFSVDREEV 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122799g00001 700 Pfam Ion transport protein 54 381 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc122799g00001 700 ProSiteProfiles cAMP/cGMP binding motif profile. 454 584 IPR000595 -
Stsc122799g00001 700 MobiDBLite consensus disorder prediction 636 655 - -
Stsc122799g00001 700 SMART cnmp_10 454 585 IPR000595 -
Stsc122799g00001 700 SUPERFAMILY Voltage-gated potassium channels 46 376 - -
Stsc122799g00001 700 Gene3D Helix hairpin bin 382 445 - -
Stsc122799g00001 700 CDD CAP_ED 454 585 IPR000595 -
Stsc122799g00001 700 SUPERFAMILY cAMP-binding domain-like 384 579 IPR018490 -
Stsc122799g00001 700 Gene3D - 60 379 - -
Stsc122799g00001 700 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 29 693 - -
Stsc122799g00001 700 Pfam Cyclic nucleotide-binding domain 477 565 IPR000595 -
Stsc122799g00001 700 MobiDBLite consensus disorder prediction 673 700 - -
Stsc122799g00001 700 MobiDBLite consensus disorder prediction 626 655 - -
Stsc122799g00001 700 Gene3D Jelly Rolls 452 572 IPR014710 -
Stsc122799g00001 700 FunFam Cyclic nucleotide-gated ion channel 1 452 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122799g00001 Stsc-Chr122799 2756 6556 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122799g00001 22 700 Ion Channels AT5G14870 67.003 0.0 983
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122799g00001 K05391 - gmx:100802812 1152.5