Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122779g00001 ATGAACCAAAGATCACATATTCTCTATGAACAGTTAAAAGGTTTTGTCCAAAGAATGGACATGACTGTTGTGAAAAAGGATCTGCCTCCCAAAACTGTCTATGTGGTAACTGTCAAGCTTTCTTTGTTACAAAGAAAATTGTACAAGAGATTCCTTGATGTGCATGGATTCAGTAAAGACAGCTCTCATGAAAAGTTTGGAAAAAGATGTTTTTTTGCTGGTTACCAGGCATTAGCTCGGATATGGAACCACCCTGGGATCTTGCAATTAACAAAAGAAGATAAGGACTATGTAAAACAAGAGGAAGCTGTTGAGAATTTTATTGTGGATGATTGCAGCAGTGATGATAATTCCGACATTAATGCTGTTGGAGAGAAGATGAGGTATGCAAATGATTTGCCACAAAAGAAAGATGGTACTGGCTTTTTCGTAAAGGGTTGGTGGCATGATCTACTTCCCGGAAATATTTATAAAGAGCCTGGTCATGGTGGCAAAATGGTTTTACTACTTGAGATATTAACCATGAGTTCTAGTGTGGGCGATAAGGTGTTAGTATTTAGTCAGAGCATACCGACACTAGACATCATAGAACTTTATCTCTCAAAGATTCCTCGACATGGCAAACCAGGGAAGCGCTGGAAGAAGGGGAAAGATTGGTATCGGCTGGATGGAAGGACAGAGAGCTCTGAGAGGCAGAGGATTGTTGAGAGATTTAATGAACCCTCAAATAGGAGGGTAAAATGCACTCTGATTTCAACCAGAGCAGGGTCTTTGGGTATTAACCTTCATTCTGCTAACCGCGTTGTTATAATTGATGGTTCTTGGAATCCAACATATGATCTGCAGGCCATCTATCGAGCTTGGAGGTATGGTCAAACAAAACCTGTATTTGCATACCGATTGCTGGCTCATGGCACCATGGAAGAGAAAATATATAAGCGCCAGGTAACAAAGGAGGGGCTTGCCGCTAGAGTGGTTGATAGGCAACAGGTGCATAGGACTATATCTAAAGAAGAGATGTTACATCTGTTTGAGTTTGGTGATGATGAGAACCCTGAGACTTTGGCTGAACTTAATCAAGAAAATGGCAACAGTAGTTATACCGTTAAACATACACCACCACATTCAAATGGAAGTAGCATTTCAGATAAGCTAATGGAAAACTTGCTTAAAAATCATCAACCCCGTTGGATTGCCAATTATCATGAACATGAAACCCTGTTACAAGAAAATGAAGAGGAGAAGCTATCAAAAGAGGAGAAAGACATGGCTTGGGAGGTGTACAAGAAATCACTTGAATGGGAAGAGGTGGGGAGGGTACCAGTTTGTGACCTCATGCCTGATCAAAAGGGAGAGGTGGCTGCAAGTTCAAAACCACAACAGGTGAAAGACCCTCTTATCATGGTGTCAAGTAGTAGGATAAGGAACCGTTTCAACATGAGAAAGTGCACAAACCTTGCACACATGCTCACACTCAGAAGTCAGAGAATAAAACAAGGTGGCTGTACAGTTTGTGGGGAATGTGCTCAGGAGATTAGGTGGGATGACTTGAAGATTACTAAATAG 1566 0.4125 MNQRSHILYEQLKGFVQRMDMTVVKKDLPPKTVYVVTVKLSLLQRKLYKRFLDVHGFSKDSSHEKFGKRCFFAGYQALARIWNHPGILQLTKEDKDYVKQEEAVENFIVDDCSSDDNSDINAVGEKMRYANDLPQKKDGTGFFVKGWWHDLLPGNIYKEPGHGGKMVLLLEILTMSSSVGDKVLVFSQSIPTLDIIELYLSKIPRHGKPGKRWKKGKDWYRLDGRTESSERQRIVERFNEPSNRRVKCTLISTRAGSLGINLHSANRVVIIDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPETLAELNQENGNSSYTVKHTPPHSNGSSISDKLMENLLKNHQPRWIANYHEHETLLQENEEEKLSKEEKDMAWEVYKKSLEWEEVGRVPVCDLMPDQKGEVAASSKPQQVKDPLIMVSSSRIRNRFNMRKCTNLAHMLTLRSQRIKQGGCTVCGECAQEIRWDDLKITK 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122779g00001 521 Gene3D - 23 40 IPR027417 -
Stsc122779g00001 521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 361 IPR027417 -
Stsc122779g00001 521 Pfam SNF2-related domain 2 87 IPR000330 GO:0005524|GO:0140658
Stsc122779g00001 521 Pfam Helicase conserved C-terminal domain 166 291 IPR001650 -
Stsc122779g00001 521 PANTHER RAD54-LIKE 1 517 IPR044574 GO:0016887
Stsc122779g00001 521 Coils Coil 401 421 - -
Stsc122779g00001 521 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 168 339 IPR001650 -
Stsc122779g00001 521 CDD SF2_C_SNF 162 302 - -
Stsc122779g00001 521 Gene3D - 41 113 - -
Stsc122779g00001 521 SMART helicmild6 194 291 IPR001650 -
Stsc122779g00001 521 Gene3D - 155 394 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122779g00001 Stsc-Chr122779 3930 10589 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122779g00001 157 344 RAD5 or RAD16-like Gene Family AT5G43530 31.383 1.09e-20 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122779g00001 K10779 - gmx:100818409 798.119