Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122774g00001 ATGAGTTTCTTTATACTGACTGCAGGACAACTTGCTCGGCATGTTTATGAGGGAATGCGGGAGCAGGCTTCTAGTTTGGTGATTCAGAGATATTTCCGCATGCATAAGGCTAAGAAGGCGTATGCAGAATTATATATGTCTGCTGTCTGTATTCAGACTGGTTTGCGGGGAATGGCTGCTTGTCGTGAGCTATGCTTTAGAAGGCGTACTAGAGCGGCAATTATCATTCAGAGCCATTGCCGGAAATACTTGGCACAAGTTGATTTTATGAAATTAAAGAAAGCAGCAATTGCAACACAATGTGCATGGAGGGGAAAAGTTGCAAGGCGAGAACTACGGAAACTCAAGATGGCTGCAAGAGAAACGGGAGCTCTCCGAGCTGCCAAAAATAAGCTTGAAAAGCAAGTTGAAGACCTTACATTGAGGTTGCAGCTGGAAAAACGTTTGAGGGTTGACATGGAGGAAGCAAAAACGCGGGAAAATGAAAAATTACAGTCTGCTTTGGAGGACATGCAACTTCAGTTTTCAGAAACTAAAGTACTTCTTGAAAAGGAGCGGGAAGCTGCAAAAAGAGCAATGGAGATTGTACCTGTCATACAGGAGGTTCCAGTTGTTGACCACTCTTTGTTGGAAAAGCTTAGTAGTGAAAATGAAAAGCTTAAGAACTTGGTGAATTCACTGGAAAAGAAAATTGATGAAACAGAGAAAAGATATGAAGAGGCAAGCAGAATTGGCGAAGAAAGGTTGAAGCAAGCTTTGGATGCAGAATCAAAAGTAATCCAGATGAAGACTGCTATGCAAAGGCTTGAAGAGAAATTTTCAGACATGGAATCTGCAAACTATATTCTTCAGAAACAATCTCAGCTAAATTCATCCGTGAAAACAATAGCAGAACACATCGCAACACCTATAGATGAGAAGCTGGAAAATGGTCACCATGTGGCTGAAGAGCATAAAGCTGCTGAAATATGTGTTACGCCTGTGAAACTCTTTGGTACAGAATCCGACACTAAATTGAGGAGATCTTACATTGAAAGACAATATGAGAATGTTGATTTACTTGTCAACTGTGTTATGAAAAATATTGGCTTCAATAATGGAAAGCCTATTGCTGCGTTTACCATTTACAAATGTCTTCTACACTGGAAATCGTTTGAAGCTGAAAGAACTAATGTATTTGATCGCCTTATCCAGATGATTGGTTCTGCAATTGAGGATGAAAATGGCAATAATCTTATGGCCTATTGGTTGTCTAATACCTCTGCGTTATTATTTTTACTCGAACAAAGCCTTAAATCTGGCGGTGCATCAGCTAAAAAACCACTTAATCCAACATCTCTCTTTGGAAGAATGACCAGGAGTTTTCTTTCATCGCCTTCTTCTGCAAACATTGCCACCCCTGCATTCGAGGTTGTACGCAAGGTAGAGGCTAAATACCCTGCTTTACTTTTCAAGCAACAGCTCACAGCCTATTTGGAGAAAATATATGGCATCATTCGAGACAACTTGAAGAAGGAGTTAACACCATTGCTTGCATTATGTATCCAGGCACCAAGAATGTCAAAAGCAACATTGCGGTCTTCTGGTCGATCCTTTGGTAAAGATTCTCCTATGGTTCACTGGCTGACTATTATTGAATCCCTCAACACCCTCCTCTGTACCCTGAAAGAGAACTTTGTGCCTCAAGTTCTCATCCAAAAGATTTTCAGTCAAACATTCTCGTATATTAATGTCCAACTCTTTAATAGTCTTCTTCTGCGTCGTGATTGTTGTACGTTCAGCAATGGGGAATATGTGAAAGCTGGATTAGCTGAATTAGAGCTGTGGTGCTGCCAGGCCAAGGAAGAGTATGCAGGGTCATCTTGGGATGAGCTCAAACACATTAGACAGGCTGTTGGATTCTTGGTTATTCATCAGAAGTATAGGATTTCATATGATGAAATCATTAATGATTTATGCCCTATCCTGAGTATCCAGCAGCTGTATAGAATATGCTCGCTTTATTGGGATGCTAACTACAATACTCGAAGCGTATCTCCTGATGTCCTTTCGAGTATGAGGATGCTTATGACGGAGGACTCCAATAACGCTCAGACTGATTCTTTCTTGCTGGATGACAGCTCCAGCATTCCCTTCTCAGTGGATGACCTATCCATATCACTGCAAGAGAAGGATTTCTCGGACATGAAACTCGCGGACGAGCTTCTCGAGAATCCAAGCTTCCAGTTTTTAAACGAGTAG 2241 0.4123 MSFFILTAGQLARHVYEGMREQASSLVIQRYFRMHKAKKAYAELYMSAVCIQTGLRGMAACRELCFRRRTRAAIIIQSHCRKYLAQVDFMKLKKAAIATQCAWRGKVARRELRKLKMAARETGALRAAKNKLEKQVEDLTLRLQLEKRLRVDMEEAKTRENEKLQSALEDMQLQFSETKVLLEKEREAAKRAMEIVPVIQEVPVVDHSLLEKLSSENEKLKNLVNSLEKKIDETEKRYEEASRIGEERLKQALDAESKVIQMKTAMQRLEEKFSDMESANYILQKQSQLNSSVKTIAEHIATPIDEKLENGHHVAEEHKAAEICVTPVKLFGTESDTKLRRSYIERQYENVDLLVNCVMKNIGFNNGKPIAAFTIYKCLLHWKSFEAERTNVFDRLIQMIGSAIEDENGNNLMAYWLSNTSALLFLLEQSLKSGGASAKKPLNPTSLFGRMTRSFLSSPSSANIATPAFEVVRKVEAKYPALLFKQQLTAYLEKIYGIIRDNLKKELTPLLALCIQAPRMSKATLRSSGRSFGKDSPMVHWLTIIESLNTLLCTLKENFVPQVLIQKIFSQTFSYINVQLFNSLLLRRDCCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEIINDLCPILSIQQLYRICSLYWDANYNTRSVSPDVLSSMRMLMTEDSNNAQTDSFLLDDSSSIPFSVDDLSISLQEKDFSDMKLADELLENPSFQFLNE 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122774g00001 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 121 IPR027417 -
Stsc122774g00001 746 ProSiteProfiles IQ motif profile. 21 47 IPR000048 GO:0005515
Stsc122774g00001 746 PANTHER DILUTE DOMAIN-CONTAINING PROTEIN YPR089W 113 721 - -
Stsc122774g00001 746 Coils Coil 210 244 - -
Stsc122774g00001 746 ProSiteProfiles Dilute domain profile. 394 692 IPR002710 -
Stsc122774g00001 746 Pfam IQ calmodulin-binding motif 94 113 IPR000048 GO:0005515
Stsc122774g00001 746 Pfam IQ calmodulin-binding motif 24 41 IPR000048 GO:0005515
Stsc122774g00001 746 Pfam IQ calmodulin-binding motif 70 87 IPR000048 GO:0005515
Stsc122774g00001 746 ProSiteProfiles IQ motif profile. 69 98 IPR000048 GO:0005515
Stsc122774g00001 746 ProSiteProfiles IQ motif profile. 92 121 IPR000048 GO:0005515
Stsc122774g00001 746 Gene3D - 71 120 - -
Stsc122774g00001 746 Gene3D - 19 70 - -
Stsc122774g00001 746 FunFam unconventional myosin-Va 71 119 - -
Stsc122774g00001 746 CDD MyosinXI_CBD 345 715 IPR037975 GO:0007015
Stsc122774g00001 746 Coils Coil 122 174 - -
Stsc122774g00001 746 Coils Coil 252 286 - -
Stsc122774g00001 746 Pfam DIL domain 568 671 IPR002710 -
Stsc122774g00001 746 SMART DIL_2 567 674 IPR002710 -
Stsc122774g00001 746 SMART iq_5 20 42 IPR000048 GO:0005515
Stsc122774g00001 746 SMART iq_5 91 113 IPR000048 GO:0005515
Stsc122774g00001 746 SMART iq_5 68 90 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122774g00001 Stsc-Chr122774 1303 6352 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122774g00001 9 745 Myosins gene family AT5G43900 66.086 0.0 974
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122774g00001 K10357 - gmx:100795648 1222.61