Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122765g00004 ATGAAGAAGACGAAGAACACGAACATCACCACAATTCTCAACCTCTTTCTGGCGACGGTGCTAGCCCTGGCCCAATTTGTGAAGCACTTTGGCAAATATGGTGAGATTACGGATTCCGTCATCATGAAGGACCGAAAAACCGGCCAGCCTCGAGGATTCGGCTTTATAACTTATGCGGATCCGTCTGTGGTTGATAAAGTCATTGAGGACAATCATGTTATCAATGGCAAACAGGTTGAGATTAAGCGCACGATACCGAGGGGAGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATTTTTGTAGGTGGAATTCCTTCAACTGTGACTGAAGATGAATTTAGAGACTTTTTTACGCGATATGGAGAAGTCAAAGATCACCAAATAATGAGGGACCACTCCACAAATCGTTCTCGAGGATTTGGGTTTATCACCTTCGACTCTGAGGAAGCTGTTGATGATCTGCTGTCCATGGGTAACAGGATTGAGTTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCTGAACCAAAGAAGCCAAACCCACCACCTACATCATCCAAGCGCTATAATGACTCAAGGTCTTCATATGGTGGTGGATATGGAGATGCTTATGATGGATTTGGTGGAAGCTTTGGTGTTGGTGGTTATCGGTCAGGTGGCATGTATGGTGGTAGGAGTGGTGCTTATGGTGGCTACGGAAGTGAATTCGGCGGGTATGGAGGATATGCCGGTGCGATGGGCCCCTACAGAGGAGATCCTTCCCTGGGATATGCTGGCCGTTACGGTGGTGGAGCCTTTAGCCGAGGCTATGATCTTGGTGGGTATGGTGGAGCTAGCGAGAATTACGGGGCATATGGTGGTGCTGCTGCTGGCGGTGGTTCTTCTGCTGGTGGTGCCTATCAAACTGGCTATGGTGCTGGACTAGGCGGTGGATATGGAGGGGCCAGCGGAGGCTCCTTTTACGGGAGTAGAGGAGGATACGGTGCTGGTCGATATCATCCTTATGGAAGATAG 1014 0.4892 MKKTKNTNITTILNLFLATVLALAQFVKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDNHVINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSTVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFDSEEAVDDLLSMGNRIEFAGAQVEIKKAEPKKPNPPPTSSKRYNDSRSSYGGGYGDAYDGFGGSFGVGGYRSGGMYGGRSGAYGGYGSEFGGYGGYAGAMGPYRGDPSLGYAGRYGGGAFSRGYDLGGYGGASENYGAYGGAAAGGGSSAGGAYQTGYGAGLGGGYGGASGGSFYGSRGGYGAGRYHPYGR 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122765g00004 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 79 IPR000504 GO:0003723
Stsc122765g00004 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 168 IPR000504 GO:0003723
Stsc122765g00004 337 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 22 337 - -
Stsc122765g00004 337 Gene3D - 98 181 IPR012677 -
Stsc122765g00004 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 86 IPR000504 GO:0003723
Stsc122765g00004 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 176 IPR000504 GO:0003723
Stsc122765g00004 337 SMART rrm1_1 99 172 IPR000504 GO:0003723
Stsc122765g00004 337 SMART rrm1_1 14 82 IPR000504 GO:0003723
Stsc122765g00004 337 FunFam - 23 84 - -
Stsc122765g00004 337 FunFam Heterogeneous nuclear ribonucleoprotein 1 89 211 - -
Stsc122765g00004 337 MobiDBLite consensus disorder prediction 170 192 - -
Stsc122765g00004 337 SUPERFAMILY RNA-binding domain, RBD 96 206 IPR035979 GO:0003676
Stsc122765g00004 337 Gene3D - 17 89 IPR012677 -
Stsc122765g00004 337 SUPERFAMILY RNA-binding domain, RBD 26 88 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122765g00004 Stsc-Chr122765 4960 8376 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122765g00004 3 160 Eukaryotic Initiation Factors Gene Family AT2G23350 27.684 3.95e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122765g00004 K12741 K14314 gmx:100813165 381.719