Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122765g00003 ATGGACTCTGCCGGCAACGAACAATTCGTCGGTGGCGGAGAACCCTTCTCCCACAGAGAAGAAGAACACGAACTCCAACACCACCGAAGAGAAGATGAAGAAGACGAAGAACACGAACATCACCACAATTCTCAACCTCTTTCTGGCGACGGTGCTAGCCCTGGAAAGATATTTATAGGTGGTTTAGCAAGAGATACGACCGTAGCCCAATTTGTGAAGCACTTTGGCAAATATGGTGAGATTACGGATTCCGTCATCATGAAGGACCGAAAAACCGGCCAGCCTCGAGGATTCGGCTTTATAACTTATGCGGATCCGTCTGTGGTTGATAAAGTCATTGAGGACAATCATGTTATCAATGGCAAACAGGTTGAGATTAAGCGCACGATACCGAGGGGAGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATTTTTGTAGGTGGAATTCCTTCAACTGTGACTGAAGATGAATTTAGAGACTTTTTTACGCGATATGGAGAAGTCAAAGATCACCAAATAATGAGGGACCACTCCACAAATCGTTCTCGAGGATTTGGGTTTATCACCTTCGACTCTGAGGAAGCTGTTGATGATCTGCTGTCCATGGGTAACAGGATTGAGTTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCTGAACCAAAGAAGCCAAACCCACCACCTACATCATCCAAGCGCTATAATGACTCAAGGTCTTCATATGGTGGTGGATATGGAGATGCTTATGATGGATTTGGTGGAAGCTTTGGTGTTGGTGGTTATCGGTCAGGTGGCATGTATGGTGGTAGGAGTGGTGCTTATGGTGGCTACGGAAGTGAATTCGGCGGGTATGGAGGATATGCCGGTGCGATGGGCCCCTACAGAGGAGATCCTTCCCTGGGATATGCTGGCCGTTACGGTGGTGGAGCCTTTAGCCGAGGCTATGATCTTGGTGGGTATGGTGGAGCTAGCGAGAATTACGGGGCATATGGTGGTGCTGCTGCTGGCGGTGGTTCTTCTGCTGGTGGTGCCTATCAAACTGGCTATGGTGCTGGACTAGGCGGTGGATATGGAGGGGCCAGCGGAGGCTCCTTTTACGGGAGTAGAGGAGGATACGGTGCTGGTCGATATCATCCTTATGGAAGATAG 1149 0.4891 MDSAGNEQFVGGGEPFSHREEEHELQHHRREDEEDEEHEHHHNSQPLSGDGASPGKIFIGGLARDTTVAQFVKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDNHVINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSTVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFDSEEAVDDLLSMGNRIEFAGAQVEIKKAEPKKPNPPPTSSKRYNDSRSSYGGGYGDAYDGFGGSFGVGGYRSGGMYGGRSGAYGGYGSEFGGYGGYAGAMGPYRGDPSLGYAGRYGGGAFSRGYDLGGYGGASENYGAYGGAAAGGGSSAGGAYQTGYGAGLGGGYGGASGGSFYGSRGGYGAGRYHPYGR 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122765g00003 382 SMART rrm1_1 56 127 IPR000504 GO:0003723
Stsc122765g00003 382 SMART rrm1_1 144 217 IPR000504 GO:0003723
Stsc122765g00003 382 MobiDBLite consensus disorder prediction 215 237 - -
Stsc122765g00003 382 FunFam Heterogeneous nuclear ribonucleoprotein 1 54 135 - -
Stsc122765g00003 382 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 213 IPR000504 GO:0003723
Stsc122765g00003 382 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 124 IPR000504 GO:0003723
Stsc122765g00003 382 MobiDBLite consensus disorder prediction 14 45 - -
Stsc122765g00003 382 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 19 382 - -
Stsc122765g00003 382 MobiDBLite consensus disorder prediction 1 58 - -
Stsc122765g00003 382 FunFam Heterogeneous nuclear ribonucleoprotein 1 136 256 - -
Stsc122765g00003 382 Gene3D - 15 139 IPR012677 -
Stsc122765g00003 382 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 131 IPR000504 GO:0003723
Stsc122765g00003 382 Gene3D - 143 226 IPR012677 -
Stsc122765g00003 382 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 221 IPR000504 GO:0003723
Stsc122765g00003 382 SUPERFAMILY RNA-binding domain, RBD 140 251 IPR035979 GO:0003676
Stsc122765g00003 382 SUPERFAMILY RNA-binding domain, RBD 44 133 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122765g00003 Stsc-Chr122765 4960 8376 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122765g00003 48 203 Eukaryotic Initiation Factors Gene Family AT1G71770 25.287 2.12e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122765g00003 K12741 - gmx:100793209 433.721