Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122765g00002 ATGGACCAATATCCCAGCTTTCTTCCTGGCAAGATATTTGTAAGCCTTATACCACCAACCATAACAAACGAACAATTAAGAGAGCACTTTGCTAAATATGGCACCATCAGGGATTCTATCTTCATTACAGATCCCAACACCAACAACACCAGCGAGCCTCGCGGATTTGGGTTCGTGAATTTCACAGATCTCTCTGCTGTTGATAGAGTCATTGATGACAATAATCATTTTATCAATGGTATTCAGGTTGGGGTTGACAAATGCACATTACAAGGAAGAAAAAGGGAAGGCTTTAAGACTAACACACTTTATGTCTATGGAATTCGTTCAACACTTTCTTCAGATGCATTGGCAAATTTCTTTGGTCGACATGGACGAGTAATTTCTTGTAGTATAGATAGGGGAAAATGCCAAGGATCTGTTTACTTTGATTCTAGCAAAAGAGTTGATGATATTATAGCAGCTTATGGAAGTTGGGTTGATTTTCCGGGAGGAGTTAGGCTGGAAATAAGCAAGTATGTCCTAAGAAGGCAACCAATTCCTCCACCTTCTCCTTCTCCACCTCTCTTAAACAATGCTGGCATGTCCGGAAGAGGTGGCGATTTTGGAGTGCATGGTCCTCTTCAAACGCCGGGTTATAACCCGGCCGGAGGAAACACGACGGTTTATAACGTGTTGTGGCAGCCTTATGGAAGCCATGGAAATATAAGTGGTGGTGAAGGTGCTAATGGTATGGTATTGGTACCCTATCTAGAATTTCCTAATTCCACTAGATATGGATCTTACTATGCTCCTCCCACCATGTATGGTCCTCATCAATATAGAATACCTTTCAATTATGGATATGGTGGTGCAATGGGTGGTTATGCTGGTGGCCAATACGGCGGCCAAAATGTCGTCGGCTCAGCCGGTGTCTCTCAAGAGGGTAGTGGTGGTAGTGGAGGTCCCTTGAATGCTACTAGCCAAGTTGATGAGACAAAATCTCTGTTTTCATATCAAATGGTCACAAAAAAGGATTTGGGAATGGAATAG 1032 0.4283 MDQYPSFLPGKIFVSLIPPTITNEQLREHFAKYGTIRDSIFITDPNTNNTSEPRGFGFVNFTDLSAVDRVIDDNNHFINGIQVGVDKCTLQGRKREGFKTNTLYVYGIRSTLSSDALANFFGRHGRVISCSIDRGKCQGSVYFDSSKRVDDIIAAYGSWVDFPGGVRLEISKYVLRRQPIPPPSPSPPLLNNAGMSGRGGDFGVHGPLQTPGYNPAGGNTTVYNVLWQPYGSHGNISGGEGANGMVLVPYLEFPNSTRYGSYYAPPTMYGPHQYRIPFNYGYGGAMGGYAGGQYGGQNVVGSAGVSQEGSGGSGGPLNATSQVDETKSLFSYQMVTKKDLGME 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122765g00002 343 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 77 IPR000504 GO:0003723
Stsc122765g00002 343 Gene3D - 10 87 IPR012677 -
Stsc122765g00002 343 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 94 IPR000504 GO:0003723
Stsc122765g00002 343 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 9 315 - -
Stsc122765g00002 343 SMART rrm1_1 102 169 IPR000504 GO:0003723
Stsc122765g00002 343 SMART rrm1_1 11 86 IPR000504 GO:0003723
Stsc122765g00002 343 SUPERFAMILY RNA-binding domain, RBD 11 156 IPR035979 GO:0003676
Stsc122765g00002 343 Gene3D - 88 172 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122765g00002 Stsc-Chr122765 2225 3887 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122765g00002 5 132 Eukaryotic Initiation Factors Gene Family AT1G71770 26.351 1.12e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122765g00002 K12741 - ahf:112801934 179.489