Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122764g00001 ATGTGTGTGATTCTAAGTACACTCCCTTCAACCCAAGTTTCTGGTGATAATGGAGACAGTGAAGCAAATGCTCTCCTGAAATGGAGATCTACCCTTGATAACCATAGCCAAACTCTCCTATCATCTTGGAACAGCACTTCTAGTCCATGCAAATTTGAAGGAATTCAATGTGGTAATAAGTCAAACTCAGTCACCGCCATAATTCTTGCAAATTATGGACTTCAAGGTACACTCCATGGACTGAACTTTTCTTCATTTCCCAACCTTGTTAGCATAGATATTAACAGCAATTCCTTCTATGGTACCATCCCTCCACAAATTGCTAACTTGTCTAGAATTACCAATCTGAACATGTCCTACAATCTTTTCAATGGTTCAATTCCTAATGAAATGTGGAAATTAAGGTCATTACATAAGCTAGATCTTTCAAACTGCATTCTCAGTGGTAACATCTCTACTAATGTAGCAAATTTGACCAACTTGTCACACCTAGATTTAGGAGGAAATCATCTGGAAGGAGAAATTCCACAAGAAATTGGCATGTTGAGGAATTTAGAGTATCTAGGAACTGCAGAGAATCCTCTTTTAACAGGTTCAATTCCAAAGGAAATTGGAATGTTAACAAACCTTAGGGTCCTTGATTTGTCATATTGTCCTCTCTCTGGTACTATTCCTTCAGAAATTGGAAACTTGACCCATTTGACTTCTCTTTTTTTCATTCAAAACAACCTCTTTGGTCCAATTCCTCCCTCCATTTGGAACTTGACTAACTTGACTGACCTCTTACTGTCTACCAATAATTTTTCTGGTTCAATCCCAAATTCAGTTGGGAAATTGGTCAATCTTGAGCAACTTGATCTGTCTCAAACTCAAATGTCTGGTCCTATTCCTGATTCTATTGGAAACTTGACAAAACTCACCATATTGTACTTGTTCCATAGCAAATTCTCAGGAACAATTCCTTCTAGTTTAGGAAACTTGGTCAATTTGAATGTTCTTGTCCTTGCAGAGAACAATTTTTCTGGTCCTCTTCCTTCATCTTTAGGTAACTTGGTTAGGCTCACTGATCTCCAATTGGCCACAAACAAATTCAATGGAAGCCTTCCAGAGGAAATGAATAATATCATAAACTTGGGAAATTTGCAGCTATCTGAGAACAATTTTGTTGGTAGTTTGCCATCACAAATATGCTTAGGTGGTGCATTAACCAACTTCAGTGCTGATCATAACAATTTCACTGGTCCAGTACCAAGAACCTTAAAGAATTGCTCTAGTATCCTTAGAATCAGGCTTGATTCAAACCACATTGAAGGTAACATAACAGAAGATTTTGGTGTGTATCCGAATTTGGACTACATCAATCTCAGTGGCAACAAGTTTTATGGTCACATTTCTCCAAATTGGGGAAAATGTCCGAAACTTGCTTATCTTATAATTGGAAGCAACAATGTCACTGGTGCTATACCAGTGGAACTTGTTGAGGCAACCAATTTAGGTATGCTTGACCTTTCGTCGAATCAGTTGGTTGGAAAAGTTCCCAAGGAACTTGGTGAGTTGAAGAAACTAATCCAAGTGAAGATTGGCAACAACCTTCTTTCAGGAAACATTCCAGCAGAAATTGGACAGCTGCAGAGTCTTGAGATCTTGAATCTTGGAGGAAACGAGTTGAACGGCGCTATACCGGAAGAAGTTGTGGATTTACAGAAGTTAAGGGACCTGAATTTGAGCTGGAACAAGCTTGATGGAAGCATTCCCTCTGTGTTTGGCCAATCAATGGTATCTCTTGATCTCAGTGGAAATTCACTGGATGGAACAATACCAACAACCCTTGGAGGGCTACAACACTTGCAAGTGTTGGATTTGTCACTTAACAATCTTTCAGGTACTATTCCATCAAAATTCAGCCTGACATTGGAATTTGTGAACATGTCAGATAACCAGCTAGAAGGGCCAATCCCAAATAATCCTGCTTTTCTCAATGCTGATGCATTTAAGAACAACAAAGGCTTGTGTGGGAATATCAAGGGATTGGTTCAATGCTCTACCAATCTCAAAAAGAGCAACAAAAAAACCATCCTATTGATATTAATCATCACTTTGGTGACTCTAGCAGTAGTTCTTTGTGGGGTTGGAATTGCAGTGTATATCCTTTGCAGAAGTAAAAGAAAATTGGGAAACCAAGGTAAAGTCCAAGCCAAAGATGCAAGAATTGAATCACAATTTTCAATATGGAGCTATGATGGGAAAATCATGTTTGATAACATCATTGAAGCTACTAAGAATTTTGATGATTACTATCTGATTGGTGTTGGAAGCCAAGGACATGTTTACAAAGCTGAATTGCCATCAGGACAAGTTGTTGCTGTGAAGAAGCTTCATAATAATGTGTTAGTAACTGATGAAGAAGTTTCAAGCACAAAGGCTTTTACAAGTGAGGTTGAAGCATTGACACATATCAAGCACAGGAACATCATAAAGCTCTATGGATTCTGTTCACATCCACAGTTCTCATTTCTTGTTTATGAGTTCTTAGAAGGTGGAAGCTTGGATCAAGTACTGAGCAATGAGACACATGCTGCTGCATTTGATTGGGAGAAGAGGGTGAATGTTGTTAAGGGCGTGGCGAATGCTTTGTCTTACATGCATCACAATTGTTCGCCTTCTATAGTTCATCGCGATATTTCAAGCAAGAATGTCCTGTTGGATTCAGAGTATGAAGCTCATGTTTCAGATTTTGGGACTGCTAAGTTCATCAAGCCTGGTTCACATAGTTGGACAACATTTGCTGGCACTTTTGGCTATGCTGCTCCAGAACTTGCCCAAACTATGGAAGTGAATGAGAAATGTGATGTATATAGTTTTGGAGTGCTGGTTTTGGAGATCATAATGGGAAAGCACCCTGGGGATCTGATTTCATCATTGATGTCAGCATCAACAGCAGCAATGGTGAATGATTTGTTACTGATTGATGTGTTGGACCAAAGGATTGCTCATCCGAACCCCAAGAGTGCAATTGTTGAGGAGGTGATCTTGGTTGCAAGCTTGGCATTTTCTTGCTTGAAAACAAGCCCACATTCTCGACCAACAATGGATCAAGTTTCTAAGGCCCTTGAAGTAGGAAGATCAACTTTGGTGGATCAGTTTCCCAATGTTAGACTTGGACAACTACACTGA 3174 0.3932 MCVILSTLPSTQVSGDNGDSEANALLKWRSTLDNHSQTLLSSWNSTSSPCKFEGIQCGNKSNSVTAIILANYGLQGTLHGLNFSSFPNLVSIDINSNSFYGTIPPQIANLSRITNLNMSYNLFNGSIPNEMWKLRSLHKLDLSNCILSGNISTNVANLTNLSHLDLGGNHLEGEIPQEIGMLRNLEYLGTAENPLLTGSIPKEIGMLTNLRVLDLSYCPLSGTIPSEIGNLTHLTSLFFIQNNLFGPIPPSIWNLTNLTDLLLSTNNFSGSIPNSVGKLVNLEQLDLSQTQMSGPIPDSIGNLTKLTILYLFHSKFSGTIPSSLGNLVNLNVLVLAENNFSGPLPSSLGNLVRLTDLQLATNKFNGSLPEEMNNIINLGNLQLSENNFVGSLPSQICLGGALTNFSADHNNFTGPVPRTLKNCSSILRIRLDSNHIEGNITEDFGVYPNLDYINLSGNKFYGHISPNWGKCPKLAYLIIGSNNVTGAIPVELVEATNLGMLDLSSNQLVGKVPKELGELKKLIQVKIGNNLLSGNIPAEIGQLQSLEILNLGGNELNGAIPEEVVDLQKLRDLNLSWNKLDGSIPSVFGQSMVSLDLSGNSLDGTIPTTLGGLQHLQVLDLSLNNLSGTIPSKFSLTLEFVNMSDNQLEGPIPNNPAFLNADAFKNNKGLCGNIKGLVQCSTNLKKSNKKTILLILIITLVTLAVVLCGVGIAVYILCRSKRKLGNQGKVQAKDARIESQFSIWSYDGKIMFDNIIEATKNFDDYYLIGVGSQGHVYKAELPSGQVVAVKKLHNNVLVTDEEVSSTKAFTSEVEALTHIKHRNIIKLYGFCSHPQFSFLVYEFLEGGSLDQVLSNETHAAAFDWEKRVNVVKGVANALSYMHHNCSPSIVHRDISSKNVLLDSEYEAHVSDFGTAKFIKPGSHSWTTFAGTFGYAAPELAQTMEVNEKCDVYSFGVLVLEIIMGKHPGDLISSLMSASTAAMVNDLLLIDVLDQRIAHPNPKSAIVEEVILVASLAFSCLKTSPHSRPTMDQVSKALEVGRSTLVDQFPNVRLGQLH 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122764g00001 1057 Pfam Leucine Rich Repeat 209 231 IPR001611 GO:0005515
Stsc122764g00001 1057 Pfam Leucine Rich Repeat 160 179 IPR001611 GO:0005515
Stsc122764g00001 1057 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 176 272 - -
Stsc122764g00001 1057 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 274 372 - -
Stsc122764g00001 1057 ProSiteProfiles Leucine-rich repeat profile. 615 637 IPR001611 GO:0005515
Stsc122764g00001 1057 Gene3D Phosphorylase Kinase; domain 1 724 843 - -
Stsc122764g00001 1057 Pfam Protein kinase domain 766 1034 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc122764g00001 1057 Gene3D Ribonuclease Inhibitor 274 374 IPR032675 -
Stsc122764g00001 1057 ProSiteProfiles Protein kinase domain profile. 762 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc122764g00001 1057 Pfam Leucine rich repeat 87 145 IPR001611 GO:0005515
Stsc122764g00001 1057 Pfam Leucine rich repeat 448 508 IPR001611 GO:0005515
Stsc122764g00001 1057 Pfam Leucine rich repeat 526 580 IPR001611 GO:0005515
Stsc122764g00001 1057 Gene3D Ribonuclease Inhibitor 375 683 IPR032675 -
Stsc122764g00001 1057 FunFam Leucine-rich repeat receptor protein kinase MSP1 726 843 - -
Stsc122764g00001 1057 SUPERFAMILY RNI-like 69 393 - -
Stsc122764g00001 1057 ProSitePatterns Tyrosine protein kinases specific active-site signature. 889 901 IPR008266 GO:0004672|GO:0006468
Stsc122764g00001 1057 Gene3D Transferase(Phosphotransferase) domain 1 844 1047 - -
Stsc122764g00001 1057 SUPERFAMILY Protein kinase-like (PK-like) 742 1037 IPR011009 -
Stsc122764g00001 1057 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 402 1038 - -
Stsc122764g00001 1057 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 375 684 - -
Stsc122764g00001 1057 SUPERFAMILY RNI-like 344 652 - -
Stsc122764g00001 1057 FunFam MDIS1-interacting receptor like kinase 2 844 1043 - -
Stsc122764g00001 1057 FunFam Nuclear pore complex protein NUP107 18 171 - -
Stsc122764g00001 1057 Pfam Leucine rich repeat N-terminal domain 19 57 IPR013210 -
Stsc122764g00001 1057 SMART LRR_typ_2 207 231 IPR003591 -
Stsc122764g00001 1057 SMART LRR_typ_2 567 591 IPR003591 -
Stsc122764g00001 1057 SMART LRR_typ_2 543 566 IPR003591 -
Stsc122764g00001 1057 SMART LRR_typ_2 613 636 IPR003591 -
Stsc122764g00001 1057 SMART LRR_typ_2 255 279 IPR003591 -
Stsc122764g00001 1057 SMART LRR_typ_2 158 182 IPR003591 -
Stsc122764g00001 1057 SMART LRR_typ_2 327 351 IPR003591 -
Stsc122764g00001 1057 Gene3D Ribonuclease Inhibitor 176 273 IPR032675 -
Stsc122764g00001 1057 Gene3D Ribonuclease Inhibitor 18 175 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122764g00001 Stsc-Chr122764 3265 6652 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122764g00001 21 937 Receptor kinase-like Gene Family AT4G08850 43.502 0.0 715
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc122764g00001 Pkinase 4.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122764g00001 - - gmx:100815688 1205.28