Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122736g00001 ATGAGAGGAGAAGAAAGCCAAAGCCAGATAACACATCAATCCTCCATAGCTGCTGCTGCTTCATCAGCTACCACTCCTCCTCCTCCTTCCACTGTTCCTCAGAAGAAAAGAAGGAATCAACCTGGAACACCGAATCCAGATGCAGAAGTGATAGCACTATCACCAAAGACACTAATGGCAACAAACAGGTTCATATGCGAGGTTTGTAACAAAGGGTTTCAAAGGGAACAAAACTTACAGCTACACAGAAGAGGACACAACCTACCATGGAAGCTGAAGCAGAAGAGCAACAAGGAGCCAAAGAGAAAGGTTTATCTTTGCCCCGAACCCACGTGCGTCCACCATGACCCTTCTAGGGCCTTGGGTGACCTCACTGGTATCAAGAAGCATTACTCTCGCAAGCATGGTGAGAAGAAGTGGAAATGTGAGAAGTGTTCCAAGAAATATGCTGTTCAATCTGATTGGAAGGCTCATTCTAAGACTTGTGGAACCAGAGAATATAGATGTGACTGTGGCACTCTCTTCTCTAGACGTGACAGTTTCATCACTCATAGGGCCTTCTGTGATGCCCTAGCTCAAGAGAGTGCAAGGCACCCTAATGGCACCATGAACCCTTTAGGAGGGACACATTTGTATGCTGCCACAAACACAAACCACATGACCTTAGGCCTCTCCCAATTAGGCACCCAAATCCCCCAATTCCAAAATCACCAAACTGCCACTCACACCGCAGCCGGCATGCTCCGTCTCGGAAGCGCCGGCGCCGCCAAATTCGAGCACTTAATCCCTCCTTTAAACCATCAGTCTCCATCATTTGGACACTCACCCCAATCATCACTCACTAATCCCTCACCTTTCTTCATCAATGACCCAAATCAAGCATTTGAAGACAACAACAACAACAACAACCAATCTCATCATCATCATCAACAAGGTTCATCATTATTCTCAAGCAAGCAACTACATGGCCTAATGCAACTTCCTGATCTTCAAGGAAACTCCATCAACACCAACTCTAATAATAATCCCTCCAATCTTTTCAACCTTAGCTTCTTCCCAAACAGCAGCAATATCCCTGACCAATTCAACAGTAATAATAACCAACAAGGAACAACAACTTCAACACTATATGGTGATCACCAAATTGGTTCAGGTTTGTCTTCACTCTTTGGAAATTCATCTTCATTGCAACATGAGAACGTGTCCCCTCATATGTCAGCCACTGCATTGCTTCAGAAAGCTGCACAAATGGGTTCAACTACCACCACCACCACCAACAGCAACAACAACAACAATGGTAGTTCTTCCATCCTCAGAGGAATGTGTAGCACTTCCTCAACCAAATCAGAAAGGGAACAACTTGTTATGTCTGATCACATTGCATTTGGAAGTCGTGATCAAAGAAGATCAAGCATGGAAAATGATCATCACCACCATCAGCATCAGCAGCAGCACCTTCATGGGTTGATGAACTCCCTTGCCAATGCAGGAAACACTACTACCAGTTCCATATTTGACAATGTCCATCAAGGGAATGATGATCATCAGTTTCATCATCAGAGCTTAGATGATTCAAGTAGTAACACTAATAAGCTTCCTCAGAATCATCTTGGGGTCAGTTTTGGAGGATCTGATAAGTTGACATTGGATTTTCTTGGAGTTGGAGGAATGGTGAGAAACATAAACACTGGTGCATTTTCACAAACACATAGAGAGCAACAACAACAACAACAAGGAATGATGAGTAGCATGAGTTCTTTGGATCCTGACCTCAAATCAGCACAATCAGCACCAAGCCACCGTTTTTGA 1809 0.4417 MRGEESQSQITHQSSIAAAASSATTPPPPSTVPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPNGTMNPLGGTHLYAATNTNHMTLGLSQLGTQIPQFQNHQTATHTAAGMLRLGSAGAAKFEHLIPPLNHQSPSFGHSPQSSLTNPSPFFINDPNQAFEDNNNNNNQSHHHHQQGSSLFSSKQLHGLMQLPDLQGNSINTNSNNNPSNLFNLSFFPNSSNIPDQFNSNNNQQGTTTSTLYGDHQIGSGLSSLFGNSSSLQHENVSPHMSATALLQKAAQMGSTTTTTTNSNNNNNGSSSILRGMCSTSSTKSEREQLVMSDHIAFGSRDQRRSSMENDHHHHQHQQQHLHGLMNSLANAGNTTTSSIFDNVHQGNDDHQFHHQSLDDSSSNTNKLPQNHLGVSFGGSDKLTLDFLGVGGMVRNINTGAFSQTHREQQQQQQGMMSSMSSLDPDLKSAQSAPSHRF 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122736g00001 602 MobiDBLite consensus disorder prediction 268 315 - -
Stsc122736g00001 602 Pfam Zinc-finger double-stranded RNA-binding 64 86 IPR022755 -
Stsc122736g00001 602 MobiDBLite consensus disorder prediction 1 49 - -
Stsc122736g00001 602 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Stsc122736g00001 602 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Stsc122736g00001 602 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 11 580 IPR031140 -
Stsc122736g00001 602 SMART c2h2final6 105 135 IPR013087 -
Stsc122736g00001 602 SMART c2h2final6 64 86 IPR013087 -
Stsc122736g00001 602 SMART c2h2final6 140 160 IPR013087 -
Stsc122736g00001 602 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
Stsc122736g00001 602 MobiDBLite consensus disorder prediction 485 510 - -
Stsc122736g00001 602 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Stsc122736g00001 602 MobiDBLite consensus disorder prediction 414 451 - -
Stsc122736g00001 602 MobiDBLite consensus disorder prediction 414 453 - -
Stsc122736g00001 602 FunFam protein indeterminate-domain 12-like 43 111 - -
Stsc122736g00001 602 Gene3D Classic Zinc Finger 43 112 - -
Stsc122736g00001 602 MobiDBLite consensus disorder prediction 264 315 - -
Stsc122736g00001 602 Gene3D Classic Zinc Finger 118 197 - -
Stsc122736g00001 602 MobiDBLite consensus disorder prediction 567 602 - -
Stsc122736g00001 602 MobiDBLite consensus disorder prediction 466 534 - -
Stsc122736g00001 602 MobiDBLite consensus disorder prediction 1 25 - -
Stsc122736g00001 602 MobiDBLite consensus disorder prediction 329 352 - -
Stsc122736g00001 602 MobiDBLite consensus disorder prediction 466 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122736g00001 Stsc-Chr122736 3909 8985 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122736g00001 34 417 IDZ Gene Family AT2G02070 52.194 1.19e-125 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc122736g00001 zf-C2H2_jaz 3.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122736g00001 K25870 - gmx:100780268 572.007