Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122717g00001 ATGATACTGGTGTATAACTTCATGGACAATGGAACGATCTCTGATCATCTCCATTTGAGACAGTGTGATCAAAATCAAACTCCTTTCTCTTGGATCCAACGACTCAATATATGCATTGGAGTTGCAAAAGGCTTGCACTATCTACACACAAGGACACAGCACAAGATCATTCACCGCGACATCAAGACGACCAACATACTCTTAGACAATAATTTGGTGGCCAAAATTTCTGACTTTGGGTTGTCAAAGTCAAGCTACCCATCTTGTAGCACCACCAATGTGAAGGGAAGTGCTGGTTACCTCGATCCAGAGTATTATAGATCCCACAAGTTGACCGAGAAATTGGATTTATACTCACTCGGGGTTGTGCTGCTGGAGGTTCTAAGTTCGAGGCCTGCGTTATGCTTTGAGAATGGCAATTTGGAGCAATTAGTAGATCCCATTATTGAAGGAGAGATAGTAGAGGAGTGCTTACAGGTATATTTAGGAGTTTCAATGAGGTGTTTGGCTGAAAGAGGCGTGGAGAGGCCATCTACTGGTGACGTTCTGCAGAATCTTGAAATCGCAAAGCGATTGCAGGAAAATGGTGGTGTTATTGCTCGTGACGGAAATATGCAAGGGAATGGTAATCATGCTTTACAGGGCAATTCAGATTTGACTCCAGGGATTGAGTTTACTGACCTCATGATTCCTACCGGCAGATGA 705 0.434 MILVYNFMDNGTISDHLHLRQCDQNQTPFSWIQRLNICIGVAKGLHYLHTRTQHKIIHRDIKTTNILLDNNLVAKISDFGLSKSSYPSCSTTNVKGSAGYLDPEYYRSHKLTEKLDLYSLGVVLLEVLSSRPALCFENGNLEQLVDPIIEGEIVEECLQVYLGVSMRCLAERGVERPSTGDVLQNLEIAKRLQENGGVIARDGNMQGNGNHALQGNSDLTPGIEFTDLMIPTGR 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122717g00001 234 ProSitePatterns Serine/Threonine protein kinases active-site signature. 56 68 IPR008271 GO:0004672|GO:0006468
Stsc122717g00001 234 PANTHER OS07G0166700 PROTEIN 1 193 IPR045272 GO:0004714|GO:0006468
Stsc122717g00001 234 SMART serkin_6 1 189 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc122717g00001 234 FunFam Os07g0541700 protein 13 98 - -
Stsc122717g00001 234 SUPERFAMILY Protein kinase-like (PK-like) 2 191 IPR011009 -
Stsc122717g00001 234 Gene3D Transferase(Phosphotransferase) domain 1 8 204 - -
Stsc122717g00001 234 ProSiteProfiles Protein kinase domain profile. 1 188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc122717g00001 234 Pfam Protein kinase domain 1 141 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122717g00001 Stsc-Chr122717 107 888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122717g00001 1 234 Receptor kinase-like Gene Family AT3G51550 43.919 3.56e-68 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Stsc122717g00001 Pkinase 2.9e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122717g00001 - - gmx:100776859 330.872