Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122686g00001 ATGTGTTTTCACTTTTCACCCACGGCAAACAACGATCGTCGGACTCGTTGGGGCCGAAAAAAAACCTCCTACATAACACAGAAAGAAAGAGTTCCTTCCTCAGTTAAGAAAAGTAGAAAACGCCTTACCTTCTTCGCTTTTGTATCCGCCCGTGCTCAACCTGCCCACCCAAGAGAAAAAAAAAAAAAAAAAAAAAAACGTAAGAAAGTAAACAAAATAACAACCGCCGTCCCCATGGACTCCGTCACCGGCGCTCCGTCGCCCACCACCACCGCAACTGCCGCTACGCCGCGCCTGCCTCCGACTTCGTCGTCCCCGTTCCCCGGCCGCGAAGACTGCTGGAACGAGGACGCAACCTTCACCCTCATCGATGCCTGGGGCGACCGTTACCTTGAGCTCAACCGCGGCAACCTCCGTCAGAAGCACTGGCAAGAGGTTGCCGATGCCGTCAACGAACTCCACGCCGGAGACGGCGGCGCCGGCCAAGGAGAAACGGCCACTACCACACCCAAGCGAATTCGCCGGACCGATGTTCAGTGCAAAAACCGAATCGATACGCTCAAGAAGAAGTACAAGATCGAGAAGGCTAGGGTTTCCGAATCCGGCGGCGGTTACCAGAGCCCCTGGCCTTTCTTCTCCCGCCTCGACAACTTGATCGGCGATACTTTTCCGATCAAAAAGCTCTCGCCGCCGGCTACCGGCCGTGGAACCCCACCCTCCGCTGCCAAGCCCTTACCGCTTTCGCCGCCGGCGTGGATAACCTCTCATCCCGTCGGTCCCCGATCCGGCACTCAAAAACGCACGGCAGCCGTTCCGACGACGGCGCCGGCCAACCTCGAAGATTCTAATTTCCGGCGGAATTTCTCAGCCTTTGCAGCCGCAGCGGCTGCTGCCGCAGAAGCCGAGAGCGAAGATTCAGATGGTTGGAGGTCCGGCAGCAGTGGAAGACGGAGGAGGAGAAGGGAAATTGAGATGAAATGGTGGGAAGTTGGGTATAGGGAAGTTGCTCAGGCGATTGAGAAGTTCGGAGAGATATATGAGAGAGTTGAAGCTTCGAAGCAGAGACAGATGGTGGAGTTGGAGAAGCAGAGGATGCAATTTGCAAAAGATTTGGAGTACCAAAGGATGCAGCTTTTCATGGAGACGCAGGTTCAGCTTCAGAAAATCAAACGCACCAAACGCACTTCTGACAGTTTTTCGTAG 1203 0.5495 MCFHFSPTANNDRRTRWGRKKTSYITQKERVPSSVKKSRKRLTFFAFVSARAQPAHPREKKKKKKKRKKVNKITTAVPMDSVTGAPSPTTTATAATPRLPPTSSSPFPGREDCWNEDATFTLIDAWGDRYLELNRGNLRQKHWQEVADAVNELHAGDGGAGQGETATTTPKRIRRTDVQCKNRIDTLKKKYKIEKARVSESGGGYQSPWPFFSRLDNLIGDTFPIKKLSPPATGRGTPPSAAKPLPLSPPAWITSHPVGPRSGTQKRTAAVPTTAPANLEDSNFRRNFSAFAAAAAAAAEAESEDSDGWRSGSSGRRRRRREIEMKWWEVGYREVAQAIEKFGEIYERVEASKQRQMVELEKQRMQFAKDLEYQRMQLFMETQVQLQKIKRTKRTSDSFS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122686g00001 400 MobiDBLite consensus disorder prediction 258 279 - -
Stsc122686g00001 400 MobiDBLite consensus disorder prediction 76 100 - -
Stsc122686g00001 400 Gene3D - 114 193 - -
Stsc122686g00001 400 Pfam Myb/SANT-like DNA-binding domain 111 218 IPR044822 -
Stsc122686g00001 400 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 87 393 IPR044823 -
Stsc122686g00001 400 MobiDBLite consensus disorder prediction 56 72 - -
Stsc122686g00001 400 MobiDBLite consensus disorder prediction 227 246 - -
Stsc122686g00001 400 FunFam trihelix transcription factor ASIL2 114 193 - -
Stsc122686g00001 400 MobiDBLite consensus disorder prediction 51 111 - -
Stsc122686g00001 400 MobiDBLite consensus disorder prediction 252 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122686g00001 Stsc-Chr122686 5091 8287 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122686g00001 332 391 Trihelix Transcription Factor Family AT3G14180 50.000 2.95e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc122686g00001 Myb_DNA-bind_4 1.8e-24 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122686g00001 - - lang:109355153 367.851