Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122671g00001 ATGAATCCTTGGAACCCATATGATGATTTATACTTTCAGATTTCATCATCTTCTGCAGATTATTCATCCATCATCCCAACAAATATCCAAACATCATCATCAGCCCCGGAAGATCATCATCATCATCATCATCATCAGATCCTGGTTCATGAATATGAATATGATCCTGCTGTGGTGGAAGCAAGTAACAGTGTTCCTCCTTGTCCAAATCAAAAGGGAAAGGGAAAGGGCAAGCAGCGAAAAGGGTTGACTCCTAATAAAGCTTTGGGAGCAGAAGATGGTTATGAGAACAAGAAGTGGATGCATAGAGAGACAGAAAAACAAAGAAGGCAAGAAATGGCAAGACTTTGCACTACCTTTAGAACTCTTCTACCTTTTGAATATATTAAGGGAAAGAGGTCAACTTCTGACCACATGCTTGAGGGAGTGAAATATATTAAACACTTAGAGAATAGGGTGGAACAGTTGCAAGCCAAAAGGGATGAGTTAGTGAAGTTGACTAATTTGAGACCTAAGAGTGGAAGTAGTTCTTCAGCTTCTACAAAGCATGTTAATAATCATCATCGAACCTATGTCATTGTTGAACCTTTGCCATCAGGGGGAGTTCTGATTAAGTGCAGTTATAGCTTCCGGAACTGTGCATTCCCTTTATCAGGAATTTTGGACATTGTGCTTAAGAAAGGCCTTAATGTTGTTAATTGTACTTCAATCACAACTGATGATCATAGGTTCATACGCACTATCCGATCAGAGGGTCCAGAACTGACCACTGAGACTGATTACACTGAGCTGCAAAGAATGCTTAACGAAGCTATATCATCATCAAGTAATTAG 834 0.3957 MNPWNPYDDLYFQISSSSADYSSIIPTNIQTSSSAPEDHHHHHHHQILVHEYEYDPAVVEASNSVPPCPNQKGKGKGKQRKGLTPNKALGAEDGYENKKWMHRETEKQRRQEMARLCTTFRTLLPFEYIKGKRSTSDHMLEGVKYIKHLENRVEQLQAKRDELVKLTNLRPKSGSSSSASTKHVNNHHRTYVIVEPLPSGGVLIKCSYSFRNCAFPLSGILDIVLKKGLNVVNCTSITTDDHRFIRTIRSEGPELTTETDYTELQRMLNEAISSSSN 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122671g00001 277 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 97 149 IPR011598 GO:0046983
Stsc122671g00001 277 Coils Coil 146 169 - -
Stsc122671g00001 277 MobiDBLite consensus disorder prediction 64 91 - -
Stsc122671g00001 277 FunFam Transcription factor bHLH126 90 177 - -
Stsc122671g00001 277 Pfam Helix-loop-helix DNA-binding domain 99 150 IPR011598 GO:0046983
Stsc122671g00001 277 CDD bHLH_AtORG2_like 98 168 - -
Stsc122671g00001 277 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 79 266 - -
Stsc122671g00001 277 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 96 165 IPR036638 GO:0046983
Stsc122671g00001 277 Gene3D - 91 174 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122671g00001 Stsc-Chr122671 3813 4901 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122671g00001 93 268 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 36.872 5.84e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc122671g00001 HLH 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122671g00001 - - adu:107466968 402.905