Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122656g00001 ATGGAAGAAGAAACAGCAACAACATCATCAACAATCATTGCTGCACTCTCCACTCTCCCTCCCTCCACCCTCTCCGAACTCATCCACTCCATCGTCTCCGCCACCAACCACCGCACCCACCGCCTCGCCATACTCCTCTCCTCCCCAACCCTCTTCTCTATAACCCTCCACCATCTCCATACCCTCTCTCTCCACCAAAAAACCCTCCTCATCGCCCGACACCTCCTCTCTTTTCTCCATACTCTCACTCGCCACACCGCAATGCCGCCGCCATTATCAACTTCAATGCGGCAACGTGATCTCGACGCAGTTCACCTCCTTCTCTTGTTTTGCGAGACCCATAACCACAACCCCGAGCTTCTAGAAGCTTCCTTCTCGGAATGGAGGGTGAATTTGGGAAGGGCTTTCAGGGAGAAACTATTAGCGGCGGTTTCTTTTTGTGGCGGCTTTGGATTACAGAGTATTGGGGAGTGTAACGGGACGATCTTGATCCCTTATGTGGAAACGGTGGTTCGGTGCATGAGGCTGGTGGGGTCCATGGGGTGTTGTGTAGGGAGAGGGAATAATAAGGAGGAGGTGGAGGTGGCGGCAGCGGCAGCGGCGGTAGTGGCCTTGCCGGCGGTAGAGATGGAGGTTGGAGGGAAAGAGTGCGTGATTTGCAAGGAAGAGATGCGCGTGGGGAGGGACGTTTGCGAGTTGCCATGTCAGCATTTGTTTCATTGGATGTGCATTTTGCCGTGGCTTGGAAAGAGGAACACCTGTCCCTGCTGCAGGCTCAGGCTACCGTCCGATGATGTTTTCGGAGAGATCCAACGGCTGTGGGATATCTTGGTTAAGATGGGTGGAAAAGAATGTGGAGACGGTTAA 867 0.5386 MEEETATTSSTIIAALSTLPPSTLSELIHSIVSATNHRTHRLAILLSSPTLFSITLHHLHTLSLHQKTLLIARHLLSFLHTLTRHTAMPPPLSTSMRQRDLDAVHLLLLFCETHNHNPELLEASFSEWRVNLGRAFREKLLAAVSFCGGFGLQSIGECNGTILIPYVETVVRCMRLVGSMGCCVGRGNNKEEVEVAAAAAAVVALPAVEMEVGGKECVICKEEMRVGRDVCELPCQHLFHWMCILPWLGKRNTCPCCRLRLPSDDVFGEIQRLWDILVKMGGKECGDG 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122656g00001 288 SUPERFAMILY RING/U-box 212 263 - -
Stsc122656g00001 288 SMART ring_2 217 257 IPR001841 -
Stsc122656g00001 288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 264 IPR013083 -
Stsc122656g00001 288 Pfam Ring finger domain 215 258 IPR001841 -
Stsc122656g00001 288 ProSiteProfiles Zinc finger RING-type profile. 217 258 IPR001841 -
Stsc122656g00001 288 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 159 262 - -
Stsc122656g00001 288 CDD RING-H2_PA-TM-RING 216 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122656g00001 Stsc-Chr122656 9214 10161 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122656g00001 1 279 C3H Transcription Factor Family AT5G02750 51.220 4.62e-80 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122656g00001 K11982 - gmx:100818800 331.643