Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122649g00002 ATGTGGAATGCTCAGTTATTCAGATCTATTGATGATACAGCTACTTTTGGGTTTCCAGAAACTTCTAAAGAAGCTTATAATGTTGGGTTTGTTAGGGAGGAGGACAAGACGATAGATCGGAGCATTCAAGACGCATACATAAGTGCTATTCGTCGTGCTAAGAATTTCATCTACATTGAGAATCAGTATTTCATAGGAAGTGCTTTCGATTGGAGTGTGGACAACACCAAATTTGATGCTTGGAATCTAATCCCAAAGGAGCTTTCACTTAAAATTGTTAATAAGATTGAAGCAAATGAGAATTTCATGGTATATGTAGTGATTCCAATGTGGCCAGAAGGTGTTCCAAAAGATAAGACTACTGGAACTGTTCAAAGGATACTATATTTGCAAAGAAGGACCATAGAGATGATGTATATGGACATTGCTCAAGCACTCAATAAAAAGAAAATTAAAGAAGATCCTCGTAAATATTTATCATTCTTCTGGCTTGGCAACCGAGAGGTGAAGAAGGATGGAGAATATGTGCCTAAACAAAGACCAAAACAAGGTTCCCATTACCAAAAAGCTCAAGAGGCAAGACGCTTCATGATTTATGTGCATTCCAAGATGATGATAGTTGATGATGAATACATAATCATCGGATCTGCCAACATCAACCAGAGATCAATGGATGGAGGAAGAGACTCCGAGATTGCTATGGGAGCTTATCAACCGCACCATTTGGCCACCAACCAAGGTGGTGCGAGGGGCCAAATCCATGGCTTCCGAATGTCCCTATGGTACGAGCACCTCGGCATGCATGAAGACACCTTCCTCAACCCTGAAAATGAAGAATGTATTAACAAAGTGAACGAGCTTGCAAAGAAATATTGGGACTTGTATTCTAATAAAGATTCAGTTGACCTTCCTGGCCACTTGCTTCGGTATCCTATTGATATTTCTGCTGATGGAACCGTCACAAATCTCAAAGGATTTGAGTTCTTCCCAGACACTGATGATGCTCCTATTCTAGGTGAAAAAAATTCTACTTTACTAGTTAGATTTCTCCCGAGCAAGGTCCACACCAGGTAG 1074 0.4022 MWNAQLFRSIDDTATFGFPETSKEAYNVGFVREEDKTIDRSIQDAYISAIRRAKNFIYIENQYFIGSAFDWSVDNTKFDAWNLIPKELSLKIVNKIEANENFMVYVVIPMWPEGVPKDKTTGTVQRILYLQRRTIEMMYMDIAQALNKKKIKEDPRKYLSFFWLGNREVKKDGEYVPKQRPKQGSHYQKAQEARRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDSEIAMGAYQPHHLATNQGGARGQIHGFRMSLWYEHLGMHEDTFLNPENEECINKVNELAKKYWDLYSNKDSVDLPGHLLRYPIDISADGTVTNLKGFEFFPDTDDAPILGEKNSTLLVRFLPSKVHTR 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122649g00002 357 SMART pld_4 196 223 IPR001736 GO:0003824
Stsc122649g00002 357 Pfam PLD-like domain 47 231 IPR025202 -
Stsc122649g00002 357 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 196 223 IPR001736 GO:0003824
Stsc122649g00002 357 PANTHER PHOSPHOLIPASE D 2 340 IPR015679 -
Stsc122649g00002 357 Gene3D Endonuclease Chain A 8 244 - -
Stsc122649g00002 357 SUPERFAMILY Phospholipase D/nuclease 40 281 - -
Stsc122649g00002 357 Pfam Phospholipase D C terminal 269 340 IPR024632 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122649g00002 Stsc-Chr122649 5848 7491 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122649g00002 1 345 Phospholipase D Gene Family (Wang group) AT3G15730 65.616 5.75e-160 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122649g00002 K01115 - gmx:100794849 479.174