Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122643g00003 ATGGAGTATCTAACACTTCTGTTAACCTTCTTATTTGTGTGTGCAGTTATTCATCTTCTACTATCCAATTTAGGAATCAAAAGACAAAAATCTACCAAACTTCCACCAGGGCCAAAACCTTTACCCATCATAGGAAACATTTTGGAACTTGGTATCCAACCTCACCAATCACTTACTAAGCTTTCTCAAACTTATGGACCAATAATGACTCTTAGGCTTGGTAACATAACCACTGTAGTTATTTCATCTCCACAATTAGCCAAAGAAGTTCTCCTTAAAAATGACCAAATTTCTTCTTATAGAGCGGTTCCAGATACCCTTCATGCTCTTGATCACAACATCTATTCAGTTGGATGGATGCAACCTTCAAATCAATGGAAGATTCTTCGCAGAGTTTGCGCTACCAAAGTGTTCTCTTCGCAACAACTCGATTTCACACAAGTTCTTCGGCAAAAGAAAGTACAAGAACTTGTGAATTTTGTGAAGGAAATAAGTGAAAAAGGGGAAGCCTTGGATATCGGCGAGATTGTTTTTACAACCGTGCTTAATTTCATATCAAACACTTTCTTTTCGATAGATTTGGGTGATTTCAATTCTACCAAGTCTCTAGAGTTTAAGGAGAGCTTCTGTTCTATCAATGATGAAGCCGGGAAACCTAATATTGTGGACTTCTTCCCAATCCTTCGCTTGCTTGATCCACAAGGTGCTCGTGCAAGAATGACCAAATATATTAGAAAGTTGATAGGATTTTTTGATGGTCTTGTAGAAGAAAGGTTGCAATCAAGGTCTCTAGAAGAAAAGAAAACTAAGGCATGCAAAGATATGTTAGATTCTTTGTTAGAAGTTATGTTGGAAGAGAATTCTCAAGTGAGTCGACTCCATGTCTTGCATTTGTTTTTGGTTTTAATAGTCGCGGGAGTAGAAACAACATCAATCACCATAGAATGGGCAATGGCAGAACTACTAAAAAACCCAGAAAAGCTTGAAAAAGTTAGAAACGAACTTCAACACGTCCTTGGAAAAAATGAACAACTTGAAGAAAAACACATTTCAAAGCTTCCATTTCTAAAAGCAGTTGTGAAAGAGACTTTTCGGTTGCACCCACCTGCCCCATTCTTAGTACCCCACCAATCACAAGAAGATGTTGAACTATCACTACAACACTTACCTGCTGTACCGACGGTTATTATCGACGGCTTCATGGACACGGGCCCTACCGACGGCTCAGCC 1230 0.3894 MEYLTLLLTFLFVCAVIHLLLSNLGIKRQKSTKLPPGPKPLPIIGNILELGIQPHQSLTKLSQTYGPIMTLRLGNITTVVISSPQLAKEVLLKNDQISSYRAVPDTLHALDHNIYSVGWMQPSNQWKILRRVCATKVFSSQQLDFTQVLRQKKVQELVNFVKEISEKGEALDIGEIVFTTVLNFISNTFFSIDLGDFNSTKSLEFKESFCSINDEAGKPNIVDFFPILRLLDPQGARARMTKYIRKLIGFFDGLVEERLQSRSLEEKKTKACKDMLDSLLEVMLEENSQVSRLHVLHLFLVLIVAGVETTSITIEWAMAELLKNPEKLEKVRNELQHVLGKNEQLEEKHISKLPFLKAVVKETFRLHPPAPFLVPHQSQEDVELSLQHLPAVPTVIIDGFMDTGPTDGSA 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122643g00003 410 Coils Coil 328 348 - -
Stsc122643g00003 410 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 10 395 - -
Stsc122643g00003 410 Pfam Cytochrome P450 35 396 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc122643g00003 410 Gene3D Cytochrome P450 21 400 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc122643g00003 410 PRINTS P450 superfamily signature 305 322 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc122643g00003 410 PRINTS P450 superfamily signature 358 369 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc122643g00003 410 SUPERFAMILY Cytochrome P450 28 396 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc122643g00003 410 PRINTS E-class P450 group I signature 357 375 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc122643g00003 410 PRINTS E-class P450 group I signature 314 340 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc122643g00003 410 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc122643g00003 410 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc122643g00003 410 PRINTS E-class P450 group I signature 294 311 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122643g00003 Stsc-Chr122643 8201 11630 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122643g00003 5 384 Cytochrome P450 AT2G45550 43.896 4.19e-109 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122643g00003 - - gmx:100779789 500.36