Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122614g00001 ATGGCGGGCGGCAAAGTTATTGTTGCTGCAGTTTCTATCATCCTTGTAGTTGGTGTTGTCATTGGCACCGTTGCCATTGTGAACAACACCAACAACAACGAGAAATTGAAAACCCACAACAAGGCTGTTGAGCAATTGTGCCAAAATGCAGATGACAAGAAACTTTGCCAGGAAGTCATCGGGAATGTCAACTCCACAGACCCAAAGGAATACGTCTCAGAAGTGGTGAAGAGAACAATGGACGTTGTCATCAAGGCAGCTAACATGAGTGATACCCTCTCCGTGGAGCATGGCCAGAGTGAGCCTGGCATGAAGATGGCTTTGGAAGATTGCAAGGATTTGTTGCAATCTGCCATGCACGAACTCGAGGCCTCTATCAACCTTGTCAGTGATAACAACTTTGCAAATGTTTACCAGAGTTCTGCAGAACTCAAGAACTGGTTGGGTGCCGTCATTGCCTACCAACAATCTTGCATGGATGGCTTTGACACCGACGGTGAAAAGAAAGTCCAATCTGAGTTGAAGGCTGATAGTTTGGACAGCGTTGGCAAGTTCACCGCACTTGCTCTTGATGTTGTTTCCGGATTGTCCCACTTTCTTAACGGTTTAGATTTAAACTTGAACCTCAAACCTGTTTCTAGAAAGCTCCTTGAGGTGGATGAGGAGGGATACCCTACCTGGTTGTCCGCCGCAGATCGCAAACTCTTGGCGAACGTAAATAACGTTAAACCTAACGTTGTTGTCGCCAAGGATGGCAGTGGTCAATTTAAGACAGTTTTGGAAGCTATTAATTCTTACCCTAAGAACTTCCAAGGTAGATACATTATCTACGTTAAGGCTGGCATTTATGATGAGTACATTACCGTTAACAAGAAGTTCAAGAACATGTTTATCTATGGCGATGGAAACACAAAAACCATTATCACTGGTCGCAAGAACTTCCATGAGGGTACCAAGACAATGAGAACCGCCACATTCTCCTCCAATGCTGATGATTTCATTGCCAAGTCAATTGCATTCGAGAACACCGCCGGTGCCGAAGGTCACCAAGCAGTGGCTCTCCGCATCCAAGGTGACCGCTCAGCCTTCTTTGATTGCGCCATGCGCGGCTACCAAGACACACTTTATGCCCATGCTCATCGTCAGTATTACCGCAACTGCGAAATCTCCGGTACCATCGACTTCATCTTCGGCTATGGCACCACCTTGATCCAAAACTCCAAGATCATCGTCAGGAAGCCTATGTCAAACCAGCAGAACATTGTGGTTGCCGATGGAACTGACCAGAAGAACATGCCTTCCGGTATTGTCCTCCAAAATTGTGAGATCATGGCTGAACCCGCCCTCTACCCAGACAGGTTGACAGTGAGGACATTCTTGGCCAGGCCATGGAAGGCATTCTCAAGGGCAGTGTTCATTGAGAACAACATTGGTGACTTGATCCAGCCACAAGGTTACATCCCATGGAACCCACCAACTGAGGCTAACACTGACCATTGCTACTTTGCTGAGTTTGGAAACACTGGTGCTGGTGCCAATGCCCAGGCCAGAGCCAAATTTGCAAAGGGACTTATTAGCAAGAATGATGCTGCTAAATATCTTGCTGAGCCATGGATCCAAGCTAGCTCCTGGGTCCCAGCCACTGGCATTTCCTATGATGCTGGCTTCACCAAGGCTTAA 1680 0.472 MAGGKVIVAAVSIILVVGVVIGTVAIVNNTNNNEKLKTHNKAVEQLCQNADDKKLCQEVIGNVNSTDPKEYVSEVVKRTMDVVIKAANMSDTLSVEHGQSEPGMKMALEDCKDLLQSAMHELEASINLVSDNNFANVYQSSAELKNWLGAVIAYQQSCMDGFDTDGEKKVQSELKADSLDSVGKFTALALDVVSGLSHFLNGLDLNLNLKPVSRKLLEVDEEGYPTWLSAADRKLLANVNNVKPNVVVAKDGSGQFKTVLEAINSYPKNFQGRYIIYVKAGIYDEYITVNKKFKNMFIYGDGNTKTIITGRKNFHEGTKTMRTATFSSNADDFIAKSIAFENTAGAEGHQAVALRIQGDRSAFFDCAMRGYQDTLYAHAHRQYYRNCEISGTIDFIFGYGTTLIQNSKIIVRKPMSNQQNIVVADGTDQKNMPSGIVLQNCEIMAEPALYPDRLTVRTFLARPWKAFSRAVFIENNIGDLIQPQGYIPWNPPTEANTDHCYFAEFGNTGAGANAQARAKFAKGLISKNDAAKYLAEPWIQASSWVPATGISYDAGFTKA 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122614g00001 559 PANTHER PECTINESTERASE 15 546 - -
Stsc122614g00001 559 Coils Coil 33 53 - -
Stsc122614g00001 559 ProSitePatterns Pectinesterase signature 2. 389 398 IPR033131 -
Stsc122614g00001 559 NCBIfam pectinesterase inhibitor domain 22 176 IPR006501 GO:0004857
Stsc122614g00001 559 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 197 IPR035513 -
Stsc122614g00001 559 SUPERFAMILY Pectin lyase-like 243 554 IPR011050 -
Stsc122614g00001 559 Gene3D - 238 556 IPR012334 -
Stsc122614g00001 559 Pfam Plant invertase/pectin methylesterase inhibitor 42 190 IPR006501 GO:0004857
Stsc122614g00001 559 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 191 IPR035513 -
Stsc122614g00001 559 CDD PMEI-like_3 46 197 - -
Stsc122614g00001 559 SMART PMEI_2 38 192 IPR006501 GO:0004857
Stsc122614g00001 559 Pfam Pectinesterase 245 541 IPR000070 GO:0030599|GO:0042545
Stsc122614g00001 559 FunFam Pectinesterase 4 242 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122614g00001 Stsc-Chr122614 2489 4604 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122614g00001 4 556 Carbohydrate Esterase AT2G47030 38.475 3.40e-131 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122614g00001 K01051 - gmx:100808559 827.009