Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122610g00002 ATGTCTTCAAACAAGGCATTGAAATCAGTGAAGGATGAAAACACAGACTTGCAGAAGCAGATTGGTTGCATCACTGGTTTTTTTCAACTCTTTGACCGCCACCGTTTCATCACTCACCGAACACCTTCTTCAACTTCAGGTGAAAGCAGTAATGGAATCAAAGAGCTTAATACTAAAAACACAATGCACAAAGCAAAGGAAAAGAATCTGAAGGTTGCAAGGGAGAAGCAACAATTCTCCACCGAGTCTTCAATAACTTCTATGTCTTCATCATCTTGTTCATCTAGCATGTCGTCCCTCGAGTTCAACAGAACAATTCAGACCGAATCGCTATCAACCGGCGGAATCAATGTCTCTGAAAACTTGAATTCAGAACTACCATTGAAGCGCCTTGCCTCTTCAACTCAGAAATCCATTGACTTCTATGATATTGTCAAAGAATCAATGCAAAGAGAATCTCATGGATTATCTGTGAAGACTTTGCCTAGAGAGCAAAAGAAGGGTCCGAATCACACCTTGAAATACATCGACTCGCCCCGGCCTATGCCTGCCCCCAAATCTGTCAATGCAGGAGTTGTGGTCTCTAATGAAGCATTCCATAATCTTGCTAAGTCTAAGAAAGCGCCTTGGGATTCGCCGAGACTCTCTTATGATGGAAGGGATACACAAGACAGATTCAAAACTTCAACAAAGCATAAGGAGTTTCCAAGGTTTTCCTTGGACAGCAAGCAAGGATCCATTGGAGGTCTCAATGAAGGAAACAAGTCTCGCAACCTATTGAAGGGTCCTCAAAAAGGACATTTGAGAAGCTCCAGCTCAGTGCTTAACCAGCCGCAAGAACCAGATTCATCGAGAAGATCGTCCAGCGTTGTAGCAAAGTTAATGGGGCTGGAAACATTGCCAGACTGCACACAAACTTGCCAGACTCCACCAGGGAGTGCTAGTGTCTACAACAATAAAAATGAGCTGTTGGAAACTACCTCGGCTCAATACAGAATGGCTGATTCAATCACAAACACAACACCATATTCGCGGTTTGCTCTAGAATCAAGTCCATGGAGACAAACTGGTGCAGGCCAAGTTTCTCAACTGCATGTGTCCAAGGGAAGTGAATCTGATGTGAAAGCCTCAAAGTCCTGTGTCTCTGTATATGGGGAAATCGATAAGAGGCGGGCAGAACTCGAGTTCAAAAAGTCTGGCAAGGATCTCAGAGCCCTTAAACAAATTCTTGATGCAATGCAGAGATACAAAGATTCATCTGACAGTACTAGTGATCAAGCTTCAAATTCTCCATCTTACAAAAATATTAGTAGTCTCAATCAAGGATCAAAATCACAGAGCCCAAGAATTCGACAAAAAGACTCAGAGGCTGTCACAATTGGGACATCAAACACAAGCCAGGGTAGTGCATTGCCAATTGTCATCATGAAACCGGCAAAAGTTGCTAGAAAATCCAATGATCCTTCTTCTAAAGGAATGCGAATTCGTGGTAATGGAAGATTGATTGAGAAGCAAACAAGCAAAGATATCAGTTCAACCATCAGAAATCTCAGGGATCCTTTTAGTCAATCAGAAGAAAAGAGTAATAACTTGAGAACTTCAAAATCAATGCAATCCTTGAAAGTTCCACAAGCAAGCAATGGAGAAAACACCAGTTCTGGTAACATAACAGCTGCTAGGAGTCCAAGGGTACAGAAGAAGTTCGGGTTGGAGAGGCGCTCTCCACCAAGCAGCCCATCTTCAGATTCCAGTATTAGCAGAAGGCAGAAGTATAGGAACTCTTTGGAGTTTTCTTCTTCCCCAAGTACAACACCGAGACCGAAATTCTCCACTTTGCATGAAAGAAATGAATGTTTCAGCGAGACTAGCGTCCACTGGAGGGATTTTAAGGCTCGTGTTAATTTCATTTCTCCAGATTTTGACAACAAGAGAAGCAGTCAAAGAGAAATCATTGGCATTGATCAATCAGGAAATACCAATAGCAATTCCATCCATCTTGGTGGCCTGAATCAAAATTGTTCAGGAAACTCTAAGGCTGACACAGTAGTTACCATAGAACAACCAAGTCCTGTGTCTGTTCTTGATCCTGCATTCTATGGGGAAGACCCACCATCTCCAGTGAGAAAGAGATCAGACATCTCAGATGATTCAGGTGAAGTTCCAAGTGCTGATGAATATAGTGAGGAGAACTCAGTGGATCTTCCTTTATCCAACGCAACAAAAGCCAACTTAATCACTGGTGATAGAGACTGGAATAACCAGAATTTCATTCAAAGTCTTCAAGATATCAATCAGAATGATGAGAAACTCACCAGTTACAGTGACAATAAGGATTTTGACCATAAATATATAGCAGAAATCCTGCTAGCATCAGGTCTTCTTAGTGGACGCACCTCAAGCCAGATTTCTCATTCACCAGGCCACTTGATTAACCCAAAGTTGTTCTTTGCATTAGAACAAATGAAAACAAACCAGAAGGATTTTAACAGTAGCAAGATTATTAGTCCAGAACAACTGCAAAGAAGACTCATATTTGATGTGGTTAATGACATTCTTGTTCAAAAAGCATTCTTGGAGAGTTCCTGTACTCAGTGGCGCCTAACAAACCAGCTACCAGGTAGAAACCTACAGGGGAAGCAGCTTTTGCATGAGGTATGCACAGAAATATCCCAGTTACAACCTCAGAAGAAGAGTCTTGACCTGGCCATTGAGGATGAGAATTTGACAAGTCTCTTATGGGGAGATTCGAATTTGATGCATCACCCCACTGTTTGGACTAACAGCAGCACTGACATACCAAATGTTGTGTTGGATATAGAAAGGTTGATATTTAAAGATTTGATTACTGAAGTTGTTAGAGGAGAATTAGCAAACAGTGCTGGTAGGCATTGCAGGCAATTACTCTTTCATTAG 2913 0.4181 MSSNKALKSVKDENTDLQKQIGCITGFFQLFDRHRFITHRTPSSTSGESSNGIKELNTKNTMHKAKEKNLKVAREKQQFSTESSITSMSSSSCSSSMSSLEFNRTIQTESLSTGGINVSENLNSELPLKRLASSTQKSIDFYDIVKESMQRESHGLSVKTLPREQKKGPNHTLKYIDSPRPMPAPKSVNAGVVVSNEAFHNLAKSKKAPWDSPRLSYDGRDTQDRFKTSTKHKEFPRFSLDSKQGSIGGLNEGNKSRNLLKGPQKGHLRSSSSVLNQPQEPDSSRRSSSVVAKLMGLETLPDCTQTCQTPPGSASVYNNKNELLETTSAQYRMADSITNTTPYSRFALESSPWRQTGAGQVSQLHVSKGSESDVKASKSCVSVYGEIDKRRAELEFKKSGKDLRALKQILDAMQRYKDSSDSTSDQASNSPSYKNISSLNQGSKSQSPRIRQKDSEAVTIGTSNTSQGSALPIVIMKPAKVARKSNDPSSKGMRIRGNGRLIEKQTSKDISSTIRNLRDPFSQSEEKSNNLRTSKSMQSLKVPQASNGENTSSGNITAARSPRVQKKFGLERRSPPSSPSSDSSISRRQKYRNSLEFSSSPSTTPRPKFSTLHERNECFSETSVHWRDFKARVNFISPDFDNKRSSQREIIGIDQSGNTNSNSIHLGGLNQNCSGNSKADTVVTIEQPSPVSVLDPAFYGEDPPSPVRKRSDISDDSGEVPSADEYSEENSVDLPLSNATKANLITGDRDWNNQNFIQSLQDINQNDEKLTSYSDNKDFDHKYIAEILLASGLLSGRTSSQISHSPGHLINPKLFFALEQMKTNQKDFNSSKIISPEQLQRRLIFDVVNDILVQKAFLESSCTQWRLTNQLPGRNLQGKQLLHEVCTEISQLQPQKKSLDLAIEDENLTSLLWGDSNLMHHPTVWTNSSTDIPNVVLDIERLIFKDLITEVVRGELANSAGRHCRQLLFH 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122610g00002 970 MobiDBLite consensus disorder prediction 40 58 - -
Stsc122610g00002 970 MobiDBLite consensus disorder prediction 203 289 - -
Stsc122610g00002 970 MobiDBLite consensus disorder prediction 574 609 - -
Stsc122610g00002 970 MobiDBLite consensus disorder prediction 162 184 - -
Stsc122610g00002 970 MobiDBLite consensus disorder prediction 504 560 - -
Stsc122610g00002 970 MobiDBLite consensus disorder prediction 40 92 - -
Stsc122610g00002 970 MobiDBLite consensus disorder prediction 416 471 - -
Stsc122610g00002 970 MobiDBLite consensus disorder prediction 265 289 - -
Stsc122610g00002 970 MobiDBLite consensus disorder prediction 59 75 - -
Stsc122610g00002 970 Pfam Domain of unknown function (DUF4378) 780 950 IPR025486 -
Stsc122610g00002 970 MobiDBLite consensus disorder prediction 211 239 - -
Stsc122610g00002 970 MobiDBLite consensus disorder prediction 76 92 - -
Stsc122610g00002 970 PANTHER LONGIFOLIA PROTEIN 1 967 IPR033334 GO:0051513
Stsc122610g00002 970 MobiDBLite consensus disorder prediction 416 611 - -
Stsc122610g00002 970 MobiDBLite consensus disorder prediction 693 732 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122610g00002 Stsc-Chr122610 5587 9616 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122610g00002 139 969 TRM (TON1 Recruiting Motif) Superfamily AT1G74160 30.454 2.17e-72 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122610g00002 - - adu:107486612 1594.71