Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122599g00001 ATGGCGCACACCTCTTATTCATTGGAAATCACTTCCAGTGAAGATCCAACCGTGCCACTAGATTTTTGTTTCAGTGATTGCTTTTCCATCAACCTCAGTTGCATCATAGATTTGATCCAACTTATCCAACCCACAAACCCATCCACTGATATTTACTTTTCTTCAACTGCATTCAATGAAGCGTTCTTGGTTCCTTCCGATATCCTATGTGACTCTACTCCACTCACAGATTTCAATAGGGAAAACAACGAAATTGTACATCAAATCTTCTCTTCAGTTCCCATATCCTCTGAGTTATTGGACGAAATTTTAGCTCAGTTGGCTGAAAACGCAAGAACGATTCTAAGCAGTGACTGGTGTGGCTCGCTGGAGATGGACGTGAACCTTCATGTTGTCACGCACATTGCTGATGATGAAGAAGATTTTGATGTCTATAATGATGATGATCACCGTCAAAATGTTTCTGAAGTATGCCAACTCGTGAATCTGTTGGAGAGACCCATCAAAGTTGATGAGGAAGAAGGTGGTGTTGAACAATGCGCTATTTGCTTGGAAGAGTTTGGAGATGGTAATGAAGATTCAAGTGGAGAAGTTGTTCGCACAAATTGCTTGCATGTTTTCCATGAACGTTGTATATTCCGTTGGCTTGAGCGTTGTGTCAAATGTGAATCGCCCTATTCTTGTCCATTGTGCCGCTGCAACGTGTTTCCAACTTCAGAGGAAGATGAATAG 732 0.4167 MAHTSYSLEITSSEDPTVPLDFCFSDCFSINLSCIIDLIQLIQPTNPSTDIYFSSTAFNEAFLVPSDILCDSTPLTDFNRENNEIVHQIFSSVPISSELLDEILAQLAENARTILSSDWCGSLEMDVNLHVVTHIADDEEDFDVYNDDDHRQNVSEVCQLVNLLERPIKVDEEEGGVEQCAICLEEFGDGNEDSSGEVVRTNCLHVFHERCIFRWLERCVKCESPYSCPLCRCNVFPTSEEDE 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122599g00001 243 CDD RING-H2 180 232 - -
Stsc122599g00001 243 ProSiteProfiles Zinc finger RING-type profile. 180 232 IPR001841 -
Stsc122599g00001 243 PANTHER RING ZINC FINGER PROTEIN-RELATED 132 240 - -
Stsc122599g00001 243 SMART ring_2 180 231 IPR001841 -
Stsc122599g00001 243 SUPERFAMILY RING/U-box 179 237 - -
Stsc122599g00001 243 Pfam Ring finger domain 179 232 IPR001841 -
Stsc122599g00001 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 243 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122599g00001 Stsc-Chr122599 9479 10210 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122599g00001 164 235 C3H Transcription Factor Family AT5G41440 41.096 1.24e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122599g00001 - - adu:110273516 281.567