Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122589g00001 ATGACAACAACGGCAACACCAAAATTACCATTATACCCTCCAAGGGAAAACAAGGAGAAAAGGCCCTATAGGGGAGTGAGGAGAAGGCCATGGGGAAAATTTGCAGCTGAGATAAGAGACTCAACAAGGAATGGTGTTAGGGTTTGGATTGGGACATTTGATACAGCTGAGGCTGCAGCTTTGGCTTATGACCAAGCTGCTTTGACCACAAGAGGATCCATGGCGGTTCTCAATTTCCCTGAAGAAGTTGTTAGGGAATCACTCAAGGACATTATGGTAAATACCAACAACAACAACAATGGCTTTAACTTTAAGGCTAATTGTTTGGGAGAAGATGGTTCTTCTCCTGTTTTAGCCCTCAAGAGGAAACACACTATGAGGAAAAAGTCAAAGTCAAAGTCAAAGTCAAAGTCAAAGCTTCTGATTTTGACTTCTTCTTCTGAAGGCATTATTTGCCAGTAG 462 0.4221 MTTTATPKLPLYPPRENKEKRPYRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAALTTRGSMAVLNFPEEVVRESLKDIMVNTNNNNNGFNFKANCLGEDGSSPVLALKRKHTMRKKSKSKSKSKSKLLILTSSSEGIICQ 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122589g00001 153 FunFam Ethylene-responsive transcription factor 2 21 81 - -
Stsc122589g00001 153 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
Stsc122589g00001 153 Gene3D AP2/ERF domain 22 82 IPR036955 GO:0003700|GO:0006355
Stsc122589g00001 153 ProSiteProfiles AP2/ERF domain profile. 22 80 IPR001471 GO:0003700|GO:0006355
Stsc122589g00001 153 CDD AP2 23 81 IPR001471 GO:0003700|GO:0006355
Stsc122589g00001 153 PANTHER DNA-BINDING DOMAIN 16 134 IPR044808 GO:0003700|GO:0009873
Stsc122589g00001 153 SMART rav1_2 22 86 IPR001471 GO:0003700|GO:0006355
Stsc122589g00001 153 MobiDBLite consensus disorder prediction 1 25 - -
Stsc122589g00001 153 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Stsc122589g00001 153 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Stsc122589g00001 153 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122589g00001 Stsc-Chr122589 7779 8345 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122589g00001 19 135 AP2-EREBP Transcription Factor Family AT2G31230 63.248 2.35e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc122589g00001 AP2 4.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122589g00001 K14516 - gmx:100784784 167.933