Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122551g00003 ATGGACAGAAAGCAAGAACAAGAAAAAGGTAATAACCTGAATAATAATAATAATAAGTCTGGCATTGATGTTACTCTGATATCTCCCACCAACAAAGTTCCGAAGGCAGTTTCGCCGGTTTCCTCTGCTGCCGAAGGGGAGGCCTTAAGGCGGCCACGTGGCAGGCCTGCTGGCTCCAAGAACAAGCCGAAGCCACCGATAATCGTGACGAGGGACAGTGCTAATGCACTCAAGGCTCATGCTATGGAAGTGAGCTCTGGCTGTGATGTGAATGAGAGCTTGTTGAACTTTGCAAGGAGGAAGCAGAGAGGCCTCTGCATACTAAGTGGAACTGGATGTGTAACAAATGTGACTCTGCGCCAACCGGCCTCATCCGGCGCCATTGTGACTCTTCACGGCCGATTCGAGATCCTCTCTTTGCTGGGGTCAATCCTTCCCCCACCAGCACCACCAGGTATCACTGGCCTCACAATTTACTTGGCTGGTGCTCAGGGGCAAGTTGTAGGAGGTGCTGTTGTTGGTGCCTTGATTGCTTCTGGACCTGTTGTGATCATGGCTGCATCATTCATGCATGCTACCTTCGACCGCCTGCCATTGGAAGACGAAGAACTCGCGGCTGCAATGCAGAATCAGCATTACCAAAACGGACGCGCCACGCATCATCTCGATATCTCTGACTTGTATGCAATGCCACAGAACCTTCTCACCAATGGAACAATGGCACCAGAGATATATTCTTGGGCACCAGGGAGAAACTTGTCTAAGAGCTGA 771 0.5058 MDRKQEQEKGNNLNNNNNKSGIDVTLISPTNKVPKAVSPVSSAAEGEALRRPRGRPAGSKNKPKPPIIVTRDSANALKAHAMEVSSGCDVNESLLNFARRKQRGLCILSGTGCVTNVTLRQPASSGAIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGAVVGALIASGPVVIMAASFMHATFDRLPLEDEELAAAMQNQHYQNGRATHHLDISDLYAMPQNLLTNGTMAPEIYSWAPGRNLSKS 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122551g00003 256 MobiDBLite consensus disorder prediction 1 68 - -
Stsc122551g00003 256 MobiDBLite consensus disorder prediction 10 37 - -
Stsc122551g00003 256 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 18 217 IPR014476 GO:0003680
Stsc122551g00003 256 PIRSF ESCAROLA 1 252 IPR014476 GO:0003680
Stsc122551g00003 256 Pfam Plants and Prokaryotes Conserved (PCC) domain 79 189 IPR005175 -
Stsc122551g00003 256 CDD DUF296 80 160 IPR005175 -
Stsc122551g00003 256 Gene3D - 78 214 - -
Stsc122551g00003 256 FunFam AT-hook motif nuclear-localized protein 77 218 - -
Stsc122551g00003 256 SUPERFAMILY AF0104/ALDC/Ptd012-like 74 206 - -
Stsc122551g00003 256 ProSiteProfiles PPC domain profile profile. 74 212 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122551g00003 Stsc-Chr122551 7297 8067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122551g00003 1 255 AT-hook Motif Nuclear Localized (AHL) Family AT2G42940 68.093 2.00e-106 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122551g00003 - - gmx:100804941 387.111