Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122531g00001 ATGAAGTTGGTGCCTCTGATGAATTTTGCTCATGAACACAAGCAAGTGGTCCCAATAACACTGTTTGTTGCTGTTCTGTGCCTCTGTTTGGTCATTGGTCACTTGCTTGAAGAAAATCGATGGGTTAATGAGTCCATTGTAGCCATTGTACTTGTTCTGCATCAAGATGAAACTCCATTACTATACAGCCTGGTGTTTGGGGAAGGAGTGGTAAATGATGCAACATCAGTTGTTCTGTTCAATGCCGTACAGAAGCTTGATGTTTCAAGACTAAGTGGCAGGACATTCCGGGTTATTGGAGATTTCTTGTATCTCTTCTCATCAAGCACTGCTCTTGGAGTCTTTGCAATTGCTCCGGCATCCTTTGGAATTAGGGGACATTCAAGTGTTCGCGAGATTTCATTGATGATGTTAATGGCGTACCTATCTTACATGCTGGCCGAGCTACTTGAATTAAGTGGAATCCTCACTGTATTCTTTTGTGGGATACTAATGTCACATTATGCATGGCATAATGTAACTGAAATTTCAAGAATCACAACCAGGCATGTGTTTGCGACAATATCGTTTATTGCAGAAACTTTCATATTTCTTTACGTAGGGATGGATGCACTTGACATTGAAAAGTGGAGGATGACCAAATTAAGTTCCGGAAGTTTGATGGGAATTTACAGTTGTTTAATCTTACTGATATTGGTTGGGCGTGCTGCATTCGTTTTCCCACTCTCGGCTTTTGCAAATTACATGAGTAGGCGCGCCGAGAGGGCGTCGAGTATCACATTCAAACATCAGATAATCATTTGGTGGGCTGGTCTAATGAGGGGAGCAGTCTCAATCGCTCTTGCTTTCAAACAGTTCACATTCTCTGGTGTTACCTCTGATCCAGTGAATGCAACTATGATTACCAACACCATTATTGTTGTCCTTTTCACCACATTAGTGTTTGGTTTTCTAACAAAACCACTTATCAGGTATATGCTACCCCATAACAATAATGGAAGAAGAAGAAACACAAACCATGAAGAAACAGGGACACCTGGTGAGGACTTGAATTTACCGTTGTTATCATTTGAAGAATCAGCAGCAACAAACATAAGCCGTGCAAAGGAAAGTCTATCAATGTTGATAGAGTCTCCAGTGTACACCATACATCATTATTGGAGGAAGTTTGATGATGCATACATGAGGCCTCTCTTCGGTGGACCCCATCACCATAACAACAGCTCGTGCTGCTAG 1236 0.4167 MKLVPLMNFAHEHKQVVPITLFVAVLCLCLVIGHLLEENRWVNESIVAIVLVLHQDETPLLYSLVFGEGVVNDATSVVLFNAVQKLDVSRLSGRTFRVIGDFLYLFSSSTALGVFAIAPASFGIRGHSSVREISLMMLMAYLSYMLAELLELSGILTVFFCGILMSHYAWHNVTEISRITTRHVFATISFIAETFIFLYVGMDALDIEKWRMTKLSSGSLMGIYSCLILLILVGRAAFVFPLSAFANYMSRRAERASSITFKHQIIIWWAGLMRGAVSIALAFKQFTFSGVTSDPVNATMITNTIIVVLFTTLVFGFLTKPLIRYMLPHNNNGRRRNTNHEETGTPGEDLNLPLLSFEESAATNISRAKESLSMLIESPVYTIHHYWRKFDDAYMRPLFGGPHHHNNSSCC 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122531g00001 411 PANTHER SODIUM/HYDROGEN EXCHANGER 47 400 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Stsc122531g00001 411 Gene3D - 44 82 - -
Stsc122531g00001 411 MobiDBLite consensus disorder prediction 331 351 - -
Stsc122531g00001 411 Pfam Sodium/hydrogen exchanger family 46 323 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122531g00001 Stsc-Chr122531 3273 8848 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122531g00001 10 51 Antiporters AT5G55470 76.190 1.24e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122531g00001 - - gmx:100813332 563.148