Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122516g00002 ATGGGAAACACATGTGCAAGTGCCAAACCTGTTGCTCATGTCTCTTCTTCTAACTTCTCCGGAAGTAAGAAGCCTGTAAGTAATTCAAATAGGAGTCCAAACTCTAACATGCAAAAAGCTTCTTTGAAAACGTCCAAATCGAGTATTGATGACAAATTGATCTCCAATAACCTTAAGTCATTCAGCTTTAATGATCTAAAGGAGGCAACTAAGAACTTCCGGCGAGAAAATTTAATCGGAGAGGGAGGATTTGGGCGTGTCTTCAAGGGATGGATTGATGGGAACAACTATGCTCCAACAAAACCGGGGAGTGGAATTGTAGTGGCCATTAAGAGTCTTAAGCCAGAAAGCTTCCAAGGTCACAAGGAATGGCTTGCAGAAGTCAATTATCTCGGGCAGCTTCACCATGAAAATCTGGTGAAACTTATTGGTTATTGCTTGGAGGGTAAAAACAGACTTCTAGTTTATGAGTTTATGCAGAAAGGAAGCTTGGAGAATCATTTATTCAAAAAAGGTGTTCAACCTATAGCCTGGGCCACACGGATCAATATTGCAATTGGCGTTGCGAGAGGATTGTCATTCTTACATTCCCTGGATGCAAATGTTATCTTTCGTGATTTAAAGGCTTCCAATATCCTACTCGATTCAGATTTTAACGCAAAACTCTCGGATTTTGGCTTGGCAAGAGATGGTCCTACCGGAGATAACACTCATGTTTCAACCAGAGTTATTGGAACTCAAGGTTATGCTGCACCTGAGTATGTTGCTACAGGTCATTTAACCCCAAGAAGCGATGTATACAGCTTTGGTGTTGTCTTGTTAGAGTTATTAACTGGGAGGCGTGCACTAGAAGATGATAGGCCCGGATTTTCAGATGAAACCCTGGTGGATTGGGCGAGGCCCTTCCTGAGTGATAACCGAAGAGTACTTAGAATCATGGATACTAGGTTGGGTGGTCAATACTCCAAGAAAGGAGCACAAGCTATGGCCTCCCTTGCCTTGCAATGCCTAAACACCGATCCAAAACTTAGACCGCCTATGGTAGATGCTCTCGCAACACTAGAAGGACTCAATTCATCGAGTTCAATGCCAAGGACGCCACGATCTGGTATAGAGAGTAATTCAGCAAACCACTCTGGTCATTCACACAAGTAA 1155 0.4303 MGNTCASAKPVAHVSSSNFSGSKKPVSNSNRSPNSNMQKASLKTSKSSIDDKLISNNLKSFSFNDLKEATKNFRRENLIGEGGFGRVFKGWIDGNNYAPTKPGSGIVVAIKSLKPESFQGHKEWLAEVNYLGQLHHENLVKLIGYCLEGKNRLLVYEFMQKGSLENHLFKKGVQPIAWATRINIAIGVARGLSFLHSLDANVIFRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTQGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRALEDDRPGFSDETLVDWARPFLSDNRRVLRIMDTRLGGQYSKKGAQAMASLALQCLNTDPKLRPPMVDALATLEGLNSSSSMPRTPRSGIESNSANHSGHSHK 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122516g00002 384 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 159 368 - -
Stsc122516g00002 384 PANTHER OS01G0588500 PROTEIN-RELATED 37 357 - -
Stsc122516g00002 384 Pfam Protein tyrosine and serine/threonine kinase 76 350 IPR001245 GO:0004672|GO:0006468
Stsc122516g00002 384 ProSitePatterns Protein kinases ATP-binding region signature. 79 111 IPR017441 GO:0005524
Stsc122516g00002 384 FunFam Serine/threonine-protein kinase BIK1 39 158 - -
Stsc122516g00002 384 ProSiteProfiles Protein kinase domain profile. 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc122516g00002 384 MobiDBLite consensus disorder prediction 1 46 - -
Stsc122516g00002 384 SUPERFAMILY Protein kinase-like (PK-like) 47 355 IPR011009 -
Stsc122516g00002 384 CDD STKc_IRAK 79 357 - -
Stsc122516g00002 384 SMART serkin_6 73 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc122516g00002 384 MobiDBLite consensus disorder prediction 355 384 - -
Stsc122516g00002 384 Gene3D Phosphorylase Kinase; domain 1 47 158 - -
Stsc122516g00002 384 Gene3D Transferase(Phosphotransferase) domain 1 159 373 - -
Stsc122516g00002 384 MobiDBLite consensus disorder prediction 355 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122516g00002 Stsc-Chr122516 5752 9450 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122516g00002 43 354 Glycoside Hydrolase AT3G07070 49.842 3.56e-103 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc122516g00002 PK_Tyr_Ser-Thr 7.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122516g00002 - - gmx:100800654 624.394