Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122514g00002 ATGGTGAAGCAGAACAATAATAACGTGGAGAAGCTAGCGTCAATGGAGAAGAGTGATATGAAGTACAAAGGTGTGAGGAAGAGGAAGTGGGGGAAGTATGTTTCCGAAATAAGGCTACCCAATAGCCGAGAGAGGATTTGGTTGGGATCCTACGACACCGCCGAGAAAGCGGCGCGTGCCTTCGACGCCGCCATGTTTTGCTTACGTGGAGCAGCCGCCAAGTTCAATTTCCCCGGTGCTCCTCCACAGATCGCCGGCGGAAGGTCTATGACCCCTACGCAAATTCAGGTTGCCGCCAGCAGGTATGCCAATTCGGATCCGGGTCATGGTACGGGTCAACCCGGTTCTGCATCGTCGGAATCTTCCACGGTGTTGTCAGAGGAGACTAAGACGGTGATGCCATCGGCGTCATCGTCACCGTCACCCTCCGAGGTAACTCTCCAAACGGAAAGTGACATCAACGCAATGAATGGGTCGGGTTCAGATCTATTTGGAACAGTCGGGTCGGTTAACAACGATTCTATATTTGCGGGTTTTGATGATTTTGGGGGAGATTTCTACCTGCCAGGGATGCCAGGTTATGATTATGAAGAAGAGAATTTGGATGGTTTGATAATTGACGACACTTTCTTGTGGAGTTTCTGA 645 0.5054 MVKQNNNNVEKLASMEKSDMKYKGVRKRKWGKYVSEIRLPNSRERIWLGSYDTAEKAARAFDAAMFCLRGAAAKFNFPGAPPQIAGGRSMTPTQIQVAASRYANSDPGHGTGQPGSASSESSTVLSEETKTVMPSASSSPSPSEVTLQTESDINAMNGSGSDLFGTVGSVNNDSIFAGFDDFGGDFYLPGMPGYDYEEENLDGLIIDDTFLWSF 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122514g00002 214 FunFam Ethylene-responsive transcription factor 2 21 79 - -
Stsc122514g00002 214 MobiDBLite consensus disorder prediction 102 147 - -
Stsc122514g00002 214 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Stsc122514g00002 214 CDD AP2 21 78 IPR001471 GO:0003700|GO:0006355
Stsc122514g00002 214 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Stsc122514g00002 214 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 143 - -
Stsc122514g00002 214 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Stsc122514g00002 214 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Stsc122514g00002 214 SUPERFAMILY DNA-binding domain 21 78 IPR016177 GO:0003677
Stsc122514g00002 214 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Stsc122514g00002 214 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122514g00002 Stsc-Chr122514 5036 6087 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122514g00002 1 214 AP2-EREBP Transcription Factor Family AT1G74930 47.442 2.92e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc122514g00002 AP2 3.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122514g00002 - - gmx:732656 224.172