Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122511g00001 ATGTCAGGGTTCTGCATAAGAGAAAGAGAAAGAGAAGAAGTAGGAAGTGGAAGTGGAGGAAGAAAGTGTGGGCGTTGGAACCCAACAAGCGAACAAGTGAAGGTTCTGACAGAACTTTTCAGCTCCGGACTCAGAACTCCAAGCACCGATCAGATTCAAAGGATCTCCAATCACCTCAGCTTCTATGGCAACATTGAAAGCAAGAATGTCTTCTATTGGTTTCAGAATCATAAGGCTAGAGAGAGACACAAGCGAAGAAGGCTTTCTTTTCATAATCATGATGATCATGGAGTAGGTGCAGATAATAATCATAATCATACCACCATCAGTCTTAATAATAATTCTTCTACACAAAGTTTTGCAGAGCTGTATTCAGAGCCAGAGAAGGTGATTGAGACTCTGCAACTATTCCCATTGAACTCCTTTGGTGAATCAGAATCATCAGAGAAGATGAGTAGGGTGCATGCAAATGATCAATGCAGGGATAATAATAATAATAACATGTTCTCGTACACAATGGGGGAAAAGAATGATCACCCACCATTAGACCTTCGTTTAAGTTTCATGTAA 570 0.4035 MSGFCIREREREEVGSGSGGRKCGRWNPTSEQVKVLTELFSSGLRTPSTDQIQRISNHLSFYGNIESKNVFYWFQNHKARERHKRRRLSFHNHDDHGVGADNNHNHTTISLNNNSSTQSFAELYSEPEKVIETLQLFPLNSFGESESSEKMSRVHANDQCRDNNNNNMFSYTMGEKNDHPPLDLRLSFM 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122511g00001 189 SMART HOX_1 21 88 IPR001356 GO:0003677
Stsc122511g00001 189 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 12 108 IPR044555 GO:0003700|GO:0099402
Stsc122511g00001 189 CDD homeodomain 25 85 IPR001356 GO:0003677
Stsc122511g00001 189 Gene3D - 21 90 - -
Stsc122511g00001 189 FunFam WUSCHEL-related homeobox 11 22 90 - -
Stsc122511g00001 189 SUPERFAMILY Homeodomain-like 19 89 IPR009057 -
Stsc122511g00001 189 Pfam Homeodomain 23 83 IPR001356 GO:0003677
Stsc122511g00001 189 ProSiteProfiles 'Homeobox' domain profile. 19 84 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122511g00001 Stsc-Chr122511 3624 4839 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122511g00001 4 189 Wox Gene Family AT3G11260 48.980 1.36e-54 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Stsc122511g00001 Homeodomain 2.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122511g00001 - - aip:107622108 271.937