Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122492g00001 ATGGATGAGGAACATTCTGTACATGCCAGTTCCCAATATTCACGGCCCATGCATGAAATCACATTCTCAACTGATGACAAGCCAAAGCTTCTCAGTCAGTTAACTGCTTTGCTTGCTGAGATTGGACTGAATATCCAAGAGGCTCATGCGTTTTCCACAACTGATGGCTACTCGTTAGATGTGTTTGTTGTCGAAGGATGGCCCTATGATGAAACAGAGAAGCTTAAAACAGCTTTGGAAAAAGAGGTCATCAAGATTGAGAGGAGGGCAATGTCCAGTCAGCAATCGGTTTCTTCTGTTGGCGAACTTGAAGAAGGAAGGATGAAAAGTGAAACTGATCAGTTGAATATACCTAACGATGGGACAGATGTTTGGGAGATAGATCCTAAGCATTTGAAAATTGGAACTCAAATTGCATCTGGGTCATATGGTGAACTGTTTAAAGGTATATATTGTAGCCAGGAAGTGGCCATTAAAATTCTCAAGCCTGAGCATGTAAATTCGGATTTGCAGAGAGAATTCGTGCAGGAAGTGTACATCATGAGAAAGGTTCGACACAAAAATGTTGTACAATTTATAGGAGCTTGTACCAAGCCCCCACGCTTATGCATAGTTACAGAGTTTATGTCTGGTGGTAGTGTGTACGACTACTTACATAAGCGGAAGGGTAGTTTTAAATTTCCTACCTTGCTCAAAGTTGCAATTGATGTTGCTAAAGGAATGAACTACTTGCATCAGCATGACATAATCCATAGAGACTTGAAAGCTGCCAATCTTTTGATGGATGAAAATGGTGTTGTAAAAGTTGCTGATTTTGGGGTTGCTAGAGTTAAAGCACAATCAGGAGTTATGACAGCAGAAACTGGAACTTATCGGTGGATGGCTCCAGAGGTTATAGAACACAAGCCGTACGATCACAAGGCTGATGTATTTAGTTTTGGAATTGTTTTATGGGAGTTGCTCACTGGAAAGCTTCCCTACGAATATTTGACCCCTCTACAAGCAGCCATAGGAGTGGTTCAAAAGGGTTTACGACCTACCATTCCCAAGAACACTCATCCGAAGTTTGTTGAGCTTCTTGAGAGGTCTTGGCAGCAGGATCCTACATTGAGACCTGATTTTGCAGAAATCATCGAGATCTTGCAACAGTTAGCTAAGGAGGTTGGGGATGAAGGAGAGGAGCGACGCAAGGATAAAACTGGAGGATTTCTTTCTGTTCTCAGAAGAGGTCATCACTAA 1239 0.4205 MDEEHSVHASSQYSRPMHEITFSTDDKPKLLSQLTALLAEIGLNIQEAHAFSTTDGYSLDVFVVEGWPYDETEKLKTALEKEVIKIERRAMSSQQSVSSVGELEEGRMKSETDQLNIPNDGTDVWEIDPKHLKIGTQIASGSYGELFKGIYCSQEVAIKILKPEHVNSDLQREFVQEVYIMRKVRHKNVVQFIGACTKPPRLCIVTEFMSGGSVYDYLHKRKGSFKFPTLLKVAIDVAKGMNYLHQHDIIHRDLKAANLLMDENGVVKVADFGVARVKAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEYLTPLQAAIGVVQKGLRPTIPKNTHPKFVELLERSWQQDPTLRPDFAEIIEILQQLAKEVGDEGEERRKDKTGGFLSVLRRGHH 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122492g00001 412 SMART serkin_6 132 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc122492g00001 412 Pfam Protein tyrosine and serine/threonine kinase 132 381 IPR001245 GO:0004672|GO:0006468
Stsc122492g00001 412 ProSiteProfiles ACT domain profile. 19 91 IPR002912 -
Stsc122492g00001 412 PRINTS Tyrosine kinase catalytic domain signature 352 374 IPR001245 GO:0004672|GO:0006468
Stsc122492g00001 412 PRINTS Tyrosine kinase catalytic domain signature 206 219 IPR001245 GO:0004672|GO:0006468
Stsc122492g00001 412 PRINTS Tyrosine kinase catalytic domain signature 289 299 IPR001245 GO:0004672|GO:0006468
Stsc122492g00001 412 PRINTS Tyrosine kinase catalytic domain signature 243 261 IPR001245 GO:0004672|GO:0006468
Stsc122492g00001 412 PRINTS Tyrosine kinase catalytic domain signature 308 330 IPR001245 GO:0004672|GO:0006468
Stsc122492g00001 412 FunFam Serine/threonine-protein kinase isoform 1 122 210 - -
Stsc122492g00001 412 SUPERFAMILY ACT-like 17 81 IPR045865 -
Stsc122492g00001 412 SUPERFAMILY Protein kinase-like (PK-like) 118 381 IPR011009 -
Stsc122492g00001 412 FunFam serine/threonine-protein kinase HT1 211 401 - -
Stsc122492g00001 412 CDD ACT_TyrKc 17 83 - -
Stsc122492g00001 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672|GO:0006468
Stsc122492g00001 412 Coils Coil 69 89 - -
Stsc122492g00001 412 Gene3D - 16 89 - -
Stsc122492g00001 412 Gene3D Phosphorylase Kinase; domain 1 122 210 - -
Stsc122492g00001 412 MobiDBLite consensus disorder prediction 96 120 - -
Stsc122492g00001 412 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 76 388 - -
Stsc122492g00001 412 Gene3D Transferase(Phosphotransferase) domain 1 211 402 - -
Stsc122492g00001 412 CDD STKc_MAP3K-like 138 381 - -
Stsc122492g00001 412 ProSiteProfiles Protein kinase domain profile. 132 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122492g00001 Stsc-Chr122492 126 5117 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122492g00001 2 411 MAP Kinase Kinase Kinase AT4G35780 70.631 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Stsc122492g00001 PK_Tyr_Ser-Thr 1e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122492g00001 - - adu:107467507 792.727