Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122488g00003 ATGGCTGGTGTTATGGTTTCTACAACAGATTTTGCCCAACATACTTTGGATCAGGTGGAACCAATTCGAAACCTATTTGCAGCTCTTTTTCTCTCAAGTATCGGAATGCTTATACATGTGCAATTCCTTTGGAACCATGTTGATATCTTGCTGGCATCTGTTATTCTGGTTATAGTTGTTAAGACAGCTGTTGTTGCAGTAGTTACAAAGGCATTTGGGTATAGCATTAGAACGTCATTTCTTGTTGGTATTTCGCTTGCTCAGATTGGAGAATTTGCTTTCGTTCTCCTCAGTCGTGCTTCGAATCTCAATCTTGTTGAGGGGAAAATGTATCTCCTTCTTCTCGGGACAACGGCTTTCAGTCTGGTTACCACCCCACTATTGTTTAAGTTGATACCTCTTGTCATGAATCTTGGTGTTCTCATGCACTGGTTCCCCTCCGAAAATACCACACAGAATGAGGCGAAAGTTTCCTTGAGCGAAACAGAAAGAATGTTGTGA 501 0.4152 MAGVMVSTTDFAQHTLDQVEPIRNLFAALFLSSIGMLIHVQFLWNHVDILLASVILVIVVKTAVVAVVTKAFGYSIRTSFLVGISLAQIGEFAFVLLSRASNLNLVEGKMYLLLLGTTAFSLVTTPLLFKLIPLVMNLGVLMHWFPSENTTQNEAKVSLSETERML 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122488g00003 166 Gene3D - 1 137 IPR038770 -
Stsc122488g00003 166 Pfam Sodium/hydrogen exchanger family 1 130 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Stsc122488g00003 166 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 1 160 IPR045158 GO:0015386|GO:0071805|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122488g00003 Stsc-Chr122488 800 2570 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122488g00003 1 161 Antiporters AT5G51710 80.745 2.80e-86 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122488g00003 K26735 - pvu:PHAVU_004G1259000 263.462