Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122452g00001 ATGCAAACCAACTTTCGTGTGTCGACCCCATTTCTGTCGCAAATGGCCGCCGCTGACAACACCACCACCACCAAGCCAAGGGATTATTACAAAGTGTTGGAGGTTGATTATGATGCAACTGATGAAAACATCAAATTAAATTACCGAAGACTTGCATTGAAATGGCATCCTGACAAGCATAAAGGTGACAGTGCAGTTACTGCAAAATTTCAAGAGATAAATGAAGCTTACAATGTGTTGAGTGATCCTGCCAAGCGTTGTGACTATGATTTAACCGGAGCCTGTGAGATTGAAAAGTATAGCTTGCAGGAATACCTTACCAGATTTAAAGGCATGATTCTTACTTGCAATGGACTTGGCATCAACCATACAGACAGATGGTCACAACATTTGATTGAAAGTATTGATTCCTTAGATGAGTAA 423 0.4066 MQTNFRVSTPFLSQMAAADNTTTTKPRDYYKVLEVDYDATDENIKLNYRRLALKWHPDKHKGDSAVTAKFQEINEAYNVLSDPAKRCDYDLTGACEIEKYSLQEYLTRFKGMILTCNGLGINHTDRWSQHLIESIDSLDE 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122452g00001 140 SMART dnaj_3 27 85 IPR001623 -
Stsc122452g00001 140 Pfam DnaJ domain 28 90 IPR001623 -
Stsc122452g00001 140 Gene3D DnaJ domain 12 107 IPR036869 -
Stsc122452g00001 140 SUPERFAMILY Chaperone J-domain 24 114 IPR036869 -
Stsc122452g00001 140 CDD DnaJ 28 82 IPR001623 -
Stsc122452g00001 140 ProSitePatterns Nt-dnaJ domain signature. 70 89 IPR018253 -
Stsc122452g00001 140 ProSiteProfiles dnaJ domain profile. 28 93 IPR001623 -
Stsc122452g00001 140 PRINTS DnaJ domain signature 85 104 IPR001623 -
Stsc122452g00001 140 PRINTS DnaJ domain signature 48 63 IPR001623 -
Stsc122452g00001 140 PRINTS DnaJ domain signature 30 48 IPR001623 -
Stsc122452g00001 140 PRINTS DnaJ domain signature 65 85 IPR001623 -
Stsc122452g00001 140 FunFam Chaperone protein DNAj, putative 20 107 - -
Stsc122452g00001 140 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 19 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122452g00001 Stsc-Chr122452 4611 7142 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122452g00001 20 90 C2H2 Transcription Factor Family AT1G74250 39.474 3.19e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122452g00001 - - mtr:120580229 229.565