Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122445g00001 ATGGGTCTTGATCATCAACATCCCAACAACAATAACAATAATAGCTCCTCTTCCTCCTCAGGCCTCCACCTTGTTCTAGGGTTATCTCTCACCACCACCACCACCGCAGAGGAAACCACGGCTACTCCACCTCCTCCGTCAACCAAACCCAAGCTCTGTTCCTCTCATCATCATGATGACGCAGCAGAGCCCTCCCTAACGCTGGGTCTTTCCGGTGAGAGCTTCCAGCAGGTTCTGAAAACCAAGATTGTTACGGATTCTGCTGCGAACAACAAAGCAGGAGGTTATTGCGAGGAGCCTACAAGTGGTGAAATGTGCAGACAGGCTTCACCTCACGGCAGCGCAGTTTCGTCGTTCTCGAGTGGCGGGTGCAGGGTGGTGGCGGCGTGCGTGAAGAGGGAGAGGGATCTTAGTAGCTGTGAAGAGGCAGATGGTGATGGCGATGGCGAGAGAGTTTCTTCCAGAGTGAGCGACGAAGATGAAGACGGTACCAATGCCCGAAAGAAGCTCAGGCTCACAAAGGAACAATCTGCCCTTCTTGAAGACAGCTTCAAACAACACAGCACTCTCAATCCTAAACAGAAGCAAGCTTTGGCCAGGCAGTTAAATCTGAGGCCTCGCCAAGTTGAAGTCTGGTTCCAAAATAGGAGAGCCAGAACGAAGCTGAAGCAGACGGAAGTGGACTGCGAGTTCTTGAAGAAATGCTGCGAAACATTGACGGAGGAGAACAGAAGGCTAAAGAAGGAGCTACAAGAACTGAAGGCGCTCAAGCTGGCACAACCACTGTACATGCCTATGCCGGCGGCAACACTCACCATCTGCCCCTCTTGTGAGAGGCTCACCAACGACCCCCCGCCTTCCATGGCTCCCAAGCCTCACTTCTATAACCCCTTCACCAATCCTTCTGCAGCATGTTGA 918 0.5251 MGLDHQHPNNNNNNSSSSSSGLHLVLGLSLTTTTTAEETTATPPPPSTKPKLCSSHHHDDAAEPSLTLGLSGESFQQVLKTKIVTDSAANNKAGGYCEEPTSGEMCRQASPHGSAVSSFSSGGCRVVAACVKRERDLSSCEEADGDGDGERVSSRVSDEDEDGTNARKKLRLTKEQSALLEDSFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTEENRRLKKELQELKALKLAQPLYMPMPAATLTICPSCERLTNDPPPSMAPKPHFYNPFTNPSAAC 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122445g00001 305 MobiDBLite consensus disorder prediction 1 42 - -
Stsc122445g00001 305 ProSiteProfiles 'Homeobox' domain profile. 163 223 IPR001356 GO:0003677
Stsc122445g00001 305 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 24 285 - -
Stsc122445g00001 305 MobiDBLite consensus disorder prediction 139 169 - -
Stsc122445g00001 305 MobiDBLite consensus disorder prediction 1 66 - -
Stsc122445g00001 305 SMART halz 223 266 IPR003106 GO:0006355|GO:0043565
Stsc122445g00001 305 SUPERFAMILY Homeodomain-like 157 224 IPR009057 -
Stsc122445g00001 305 Pfam Homeodomain 167 221 IPR001356 GO:0003677
Stsc122445g00001 305 SMART HOX_1 165 227 IPR001356 GO:0003677
Stsc122445g00001 305 Gene3D - 160 228 - -
Stsc122445g00001 305 Coils Coil 229 259 - -
Stsc122445g00001 305 ProSitePatterns 'Homeobox' domain signature. 198 221 IPR017970 GO:0000981|GO:0006355
Stsc122445g00001 305 Pfam Homeobox associated leucine zipper 223 257 IPR003106 GO:0006355|GO:0043565
Stsc122445g00001 305 CDD homeodomain 167 224 IPR001356 GO:0003677
Stsc122445g00001 305 FunFam Homeobox-leucine zipper protein 18 152 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122445g00001 Stsc-Chr122445 4923 6971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122445g00001 1 305 Homeobox Transcription Factor Family AT4G37790 53.495 1.35e-91 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc122445g00001 Homeodomain 2.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122445g00001 K09338 - gmx:100795135 333.569