Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122443g00001 ATGTTGTTCCTTCACCGCCGTCTATGCACCGCAGCCACCAGAACAGTTCTCCCAAGCCTCTCCAAGGTTCCTTCAAGGTACAAGAGCCTTGCTCTTTCTCAAGCCCAGAAGATCCTCACTGATTACCTCCATTCCACAAGGTCCATCCCTTATGCCTTTGCTGATCAGATTGCTGCTAATTCTCACTCTTCTCTCTCCAATCTCATTTCAAAGGTCGGATTTTCAGCTCCTTCTTTCTCCAGCACCCTCAACAGGTTCCTCAGGTACAACCCCATCAATGAATTCGAGTTCTTTTTTGAAAGCATTGGCATAAAGTATACTCAAGTTTCTAACTTGTTGCAACCCCATAAGTTTTTCTTCTCTGAGGATGGCTCCCTTTTGGATGCTGCTTGTGTGCTCTATGAATTTGGGTTCCCTTGGAATAAGCTTGGTTTGCTTTATGTGGAAGAGTGTTCTGTGTTTAGGTGTACTGTTGATGAGTTGAAGGGCATGCTTTGTGACCTGAAAAGTTATGGTTTTTGCAATGTTCAGGTCATTGGGATATGCTTGGCTTTCCCTTTTGTTTTTGGTGAGCAGGGAGGAGTGCTGGATGCTGAGATTGATGGGTTACTTAATGATCTCAGGTTGGTTTTTGTGGATTTTAACTTGGCAGGGTGTGTTGAGGGAAATGCAGATTCTTGGTATGAAGTATGTAGGAAAATTCGGGTGTTTTACAATTTGAATGGTGAGAAGTATAAGATGGGGGAGCTCATTGGAAGGAATAAGAATGTGATTCTTGAGCATGGAGAAGAGGAGTTGGTGCTGAAAGCTGAGTATTTTAGTAGGTTTGGTGTCAAGAAGGAGGAAGTAGCTCATTTGATCCTACAGGACTCAGAATTGTTGAATCTCGATCTGGAAACACCGGTGATTAGTGTATTGAAGCTCTTGACACACTTTGGCTTGAGCTCCGAGGATCTCGATGATGTTCGGCAAAACTATGCTCATGCATTGGGAACAATAAAAATGGTTAATCTGCCTAATGTAATGAGGGCTTTGGGTTTAAGTAAGTGGTTCTTTAATAGGATAAAGGATGAGAAGCATCAACTCTTAGTGACTTATGTCACAAACTTTCCCAACGAAGACCAGGATAAAGGATATCAAGATGGTTTGAAGGCGATTGGTGCTACGAGAACCCCAGTTCACACCATGAATAAACTGAATTTCTTGCATTCCTTAGGCTTTGGAGAAAATGCCTTGACCATGGCTGTCCTAACTTACTTGAATGGAACTAGCAGCGACTTACAAGAAAGATTCAATTGCCTTCTTCATTTAGGGATTGAATTCTCAAAGCTCTGTAAGATAGTTGCAATGCAACCTAAGGTTCTAAGCCAACACCCCAAAATTATTGAGAAAAAGATTAAGTTCCTTTGTCAGGAAATGGGATCCTCTCTGGAGCTTTTGGACACTTTTCCAGCGAGAAGAACTTTGTTTCTCATGCTTTTCGCATCCACCCAGCTGCTCCAAAACATTGGTTTGAGCAATTCTATCTCCGCAAATTGCCGGAGTGATGAATTTGTACAGATTCTTAACTACTTGGTTAGTGCTAGAAAACTTGTTACAGAGTTTTATGTCCTTTGCGGTGGCAGTGAGACAGGCATCAAGAACAAGCTGCAAGTATCTCGCATAACTCTTCCCGACATCCTGTCTCAGATTCAAGCGAAAGAAACCATGAATTCTGTACACCTTTTGTCATGCTTTTTGCAAAGTGATTATATTAGAGAGAGCAAGACTGGGAATGGCTTCCTTTGCCATGGAGGGTGGGGATTGTGGAAGGCATTGGAGTTGAGATCAAATCTTTTCTTTTGA 1845 0.4228 MLFLHRRLCTAATRTVLPSLSKVPSRYKSLALSQAQKILTDYLHSTRSIPYAFADQIAANSHSSLSNLISKVGFSAPSFSSTLNRFLRYNPINEFEFFFESIGIKYTQVSNLLQPHKFFFSEDGSLLDAACVLYEFGFPWNKLGLLYVEECSVFRCTVDELKGMLCDLKSYGFCNVQVIGICLAFPFVFGEQGGVLDAEIDGLLNDLRLVFVDFNLAGCVEGNADSWYEVCRKIRVFYNLNGEKYKMGELIGRNKNVILEHGEEELVLKAEYFSRFGVKKEEVAHLILQDSELLNLDLETPVISVLKLLTHFGLSSEDLDDVRQNYAHALGTIKMVNLPNVMRALGLSKWFFNRIKDEKHQLLVTYVTNFPNEDQDKGYQDGLKAIGATRTPVHTMNKLNFLHSLGFGENALTMAVLTYLNGTSSDLQERFNCLLHLGIEFSKLCKIVAMQPKVLSQHPKIIEKKIKFLCQEMGSSLELLDTFPARRTLFLMLFASTQLLQNIGLSNSISANCRSDEFVQILNYLVSARKLVTEFYVLCGGSETGIKNKLQVSRITLPDILSQIQAKETMNSVHLLSCFLQSDYIRESKTGNGFLCHGGWGLWKALELRSNLFF 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122443g00001 614 PANTHER CGI-12 PROTEIN-RELATED 37 484 IPR003690 GO:0003690|GO:0006355
Stsc122443g00001 614 SMART mt_12 284 315 IPR003690 GO:0003690|GO:0006355
Stsc122443g00001 614 SMART mt_12 248 279 IPR003690 GO:0003690|GO:0006355
Stsc122443g00001 614 SMART mt_12 445 476 IPR003690 GO:0003690|GO:0006355
Stsc122443g00001 614 Gene3D Transcription termination factor 3, mitochondrial 388 524 IPR038538 -
Stsc122443g00001 614 Gene3D Transcription termination factor 3, mitochondrial 60 213 IPR038538 -
Stsc122443g00001 614 Gene3D Transcription termination factor 3, mitochondrial 224 355 IPR038538 -
Stsc122443g00001 614 Pfam mTERF 233 332 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122443g00001 Stsc-Chr122443 6519 8646 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc122443g00001 mTERF 1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122443g00001 - - aip:107624793 652.514