Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122417g00003 TCACCAGAACCACAATCGGAACCAGAGCCAGTTGCAGTTCCAAAGTCCTTAAACAATGGGATGAAGCATAGCACATCTCATGGGAGGAGTCAGGGAAGAATTACTAGAAAGGACCTACGCCTGCATAAGTTGGTATTCGAGGAAGACGTGCTGGCAGATGGAACTGAACTAACTTATTATTCTCATGGAGAGAAAAAGCTGGTAGGTTACAAGAAGGGATATGGAATTTTTTGTACCTGCTGCAAATCTGAGGTCAGTGCGTCTCAGTTTGAAGCCCATGCTGGCTTGGCATCTCGACGCAAGCCTTACTTACACATATACACACCTGATGGAGTTTCACTCCATGATTTGTCTATCTCTTTATCAAAAGATCGGAGGTTTGCTATCAGTGAAAATGATGACCTCTGCAGCATTTGTGAAGATGGAGGGGATCTTTTGTGCTGTGATGGATGCCCAAGAGCTTTTCACATAGATTGTGTTCCTCTTCCATGTATTCCGAGTGGCACATGGTATTGTAAGTATTGCCAGAATCTTTACGGGGAGCATAATGCAAATGGGCAAGGAAAAACCCGAAGATGCGTTCGTGTTGTCAAACCTAATAAGGTTGACCATGGTGGATGTGCCTTATGCAGCCAGCCCTATTTCAGTAAAAGTTTTAGTCCTCGAACAGTGATCATTTGTGATCAGTGTGAAAAAGAATATCACGTAGGGTGCTTGAAGGATCATAACATACAAAACCTCGAGGAGAGGTTTGATCCTATAGTTGATTCTAGTTCTGGCCGTGATTTTATTCCAACCATGCTATTTGGAAGGAACATCCGGGGTCAAGATTTTAGTGGAATGTACTGTGCGGTGCTTACTGTCAACCAAGTTGTTGTGTCTGCTGGCATATTTCGTGTCTTTGGGCTAGAAGTAGCAGAGCTTCCACTAGTGGCAACAGTCCCAGATTTCCAAGGAAAGGGTTACTTTCAGTGCCTGTTTTCTTGCATGGAGAGGCTGCTTGTATCTCTGAATGTGAGACACCTTGTTTTGCCTGCTGCTGAAGAAGCCGAATCAATATGGACAAGTAAATTTGGGTTTACGAAACTAGAACAAGGGGAGATAGACTACTATAAGAAATTTTATCGCATGATGATCTTTCAAGGGACTTCATTACTACGAAAGCCGGTTCCTATGCCTGAACAGAACTAA 1191 0.4341 SPEPQSEPEPVAVPKSLNNGMKHSTSHGRSQGRITRKDLRLHKLVFEEDVLADGTELTYYSHGEKKLVGYKKGYGIFCTCCKSEVSASQFEAHAGLASRRKPYLHIYTPDGVSLHDLSISLSKDRRFAISENDDLCSICEDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCQNLYGEHNANGQGKTRRCVRVVKPNKVDHGGCALCSQPYFSKSFSPRTVIICDQCEKEYHVGCLKDHNIQNLEERFDPIVDSSSGRDFIPTMLFGRNIRGQDFSGMYCAVLTVNQVVVSAGIFRVFGLEVAELPLVATVPDFQGKGYFQCLFSCMERLLVSLNVRHLVLPAAEEAESIWTSKFGFTKLEQGEIDYYKKFYRMMIFQGTSLLRKPVPMPEQN 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122417g00003 396 PANTHER AUTOIMMUNE REGULATOR 5 249 - -
Stsc122417g00003 396 Gene3D - 264 387 - -
Stsc122417g00003 396 MobiDBLite consensus disorder prediction 1 34 - -
Stsc122417g00003 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 194 IPR013083 -
Stsc122417g00003 396 SUPERFAMILY FYVE/PHD zinc finger 125 177 IPR011011 -
Stsc122417g00003 396 ProSiteProfiles Zinc finger PHD-type profile. 133 178 IPR019787 -
Stsc122417g00003 396 SUPERFAMILY FYVE/PHD zinc finger 203 243 IPR011011 -
Stsc122417g00003 396 CDD NAT_SF 283 344 - -
Stsc122417g00003 396 ProSitePatterns Zinc finger PHD-type signature. 136 175 IPR019786 -
Stsc122417g00003 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 254 IPR013083 -
Stsc122417g00003 396 SMART PHD_3 135 176 IPR001965 -
Stsc122417g00003 396 SMART PHD_3 206 287 IPR001965 -
Stsc122417g00003 396 Pfam Tify domain binding domain 69 117 IPR032308 -
Stsc122417g00003 396 CDD PHD1_AIRE 135 175 - -
Stsc122417g00003 396 Pfam PHD-finger 136 177 IPR019787 -
Stsc122417g00003 396 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 279 377 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122417g00003 Stsc-Chr122417 5498 9810 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122417g00003 145 390 PHD Transcription Factor Family AT2G36720 40.304 6.80e-49 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc122417g00003 TDBD 1.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122417g00003 - - lang:109350941 414.846