Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122417g00001 ATGATTTCAACAAGTCTCCAACATCAAGGGATGATGATGATGCAGATGTTCCCACCTCCTGGGACAGAGGATTTGGTCTCACAATCTGTGGAAATTGTTAACAACATCAACAACTCTACTGCTGTTGGTTCTTCTTCACACTCAAGCTCCCTCCTCTTCAATCTCTCTGTTCTGAGGGACAAGCTCAATCAGGTTCAGACCCTTGTTGGTGTTATTCTCTCCCCAGATCAGAACCTACAGGACTCAACAACTTCCATAGCTGTTTCAAGCATGAACTCCACAATCCAAGAAATCATTGTCACTGCAACTTCAATGATGTTCACCTGCCAACAGATCGCTCTCACTTTCCCTCCTCCTCCTTCAGGTACCATTGCTACTACTACTCTTGCTCCTTGCGCCAACAACAACAACCAATTGCACCAACAGCATCAAAGGTTCATCAATAATAATATTAGAGTCAATAGCCAAGGTTTCTTTTCTAGCACTACTGATTCTGAGGCACTGGATAATTGGTTTGGTGAAAGCTATAACAACAATAGTGGTGTTGATTGTAATAAGGTTAAGAATAATAATAACAATGATGATGATGATCCAAGTGTTGAAATTAGTGATAACAAAGAAGGGGTTATTGTTTCATCACCAAAGAGCTTTGATATAATTGAATTGGATGCTGGGGATTTGTTGGCGAAATACACACATTACTGCAGTGTTTGTGGAAAAGGCTTCAAGCGCGATGCGAATCTGAGGATGCATATGAGAGCTCATGGTGATGAATACAAAACCAGTGCCGCATTGAAGAAGCACAATAATAAACATGGTGGTGATGGTGATTGTTTGGTGAAATATTCATGCCCTCAAGAAGGGTGTAGGTGGAACCAGAAGCACCCAAAGTTTCAGCCATTGAAGTCAATGATTTGTGCAAAGAATCACTACAAGAGAAGCCATTGTCCAAAGATGTATGTGTGCAAGAGGTGCAACCAGAAGCAATTCTCTGTGCTGTCTGATCTGAGAACACATGAGAAGCACTGTGGGGATCTCAAGTGGCAGTGTTCTTGTGGCACCACTTTTTCAAGGAAAGACAAGCTTATGGGCCATGTTGCCTTGTTTGTTGGCCACCGTGCCCTTCCTATTGCCTGA 1137 0.4248 MISTSLQHQGMMMMQMFPPPGTEDLVSQSVEIVNNINNSTAVGSSSHSSSLLFNLSVLRDKLNQVQTLVGVILSPDQNLQDSTTSIAVSSMNSTIQEIIVTATSMMFTCQQIALTFPPPPSGTIATTTLAPCANNNNQLHQQHQRFINNNIRVNSQGFFSSTTDSEALDNWFGESYNNNSGVDCNKVKNNNNNDDDDPSVEISDNKEGVIVSSPKSFDIIELDAGDLLAKYTHYCSVCGKGFKRDANLRMHMRAHGDEYKTSAALKKHNNKHGGDGDCLVKYSCPQEGCRWNQKHPKFQPLKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHRALPIA 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122417g00001 378 SMART c2h2final6 233 255 IPR013087 -
Stsc122417g00001 378 SMART c2h2final6 282 315 IPR013087 -
Stsc122417g00001 378 SMART c2h2final6 320 342 IPR013087 -
Stsc122417g00001 378 FunFam Zinc finger protein 574 232 257 - -
Stsc122417g00001 378 ProSitePatterns Zinc finger C2H2 type domain signature. 235 255 IPR013087 -
Stsc122417g00001 378 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 34 374 IPR044300 GO:0010044|GO:0010447
Stsc122417g00001 378 ProSiteProfiles Zinc finger C2H2 type domain profile. 233 260 IPR013087 -
Stsc122417g00001 378 Gene3D Classic Zinc Finger 318 368 - -
Stsc122417g00001 378 MobiDBLite consensus disorder prediction 183 202 - -
Stsc122417g00001 378 Gene3D Classic Zinc Finger 216 287 - -
Stsc122417g00001 378 SUPERFAMILY beta-beta-alpha zinc fingers 231 259 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122417g00001 Stsc-Chr122417 671 2738 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122417g00001 36 372 C2H2 Transcription Factor Family AT5G22890 48.857 1.04e-103 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc122417g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122417g00001 - - gsj:114375424 421.779