Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122416g00001 ATGCAGCAAATGACAAGCCCAACATTCCAGCATCAATCTTCCGTCTCCAAGAATCGCAACGGCCTTCATTCCAATAAACATGGGAGTGGAAGCAAAAGCAGCAGCAGCTTTCGTTCCATTTTATCAGTAAATGTGAATTTGAATGTGCAGAAGCAGCATCCATATCACCATCACATGATGATGAAGGATAGCAATGATGAATCCTCTAACAGTAACAGCAGTCCCTACTACAAAGGCCTCACCGATCAATCCCTTGCCATCATTGCACCATCATCTCCACCTCATCATCATGATCATGCTACTATTCCTTGCTACCCTCTTACTCCACTTCCTCTCCCTGTTCGCATTGCTGTTACCAATAATAATAACAACCTTCATCCTCATCACCTTTCGTCTTCCGGATCCGGGGGGCAGGGACAAGAAGGGCATGTGCAAAGTCCGTACTACAAGGGTCTTACAGATTATTCCCTTGTTATTGGTTCCTGGAGCAGCCACAATCCTACTTCCACCAATCCATCGTACCACCACCAGTCTAGCCCTTACTACAGGGGCCTCACGGATTTCTCCCTTGTCCTTCATGATGATCATCATCATCATCATGATGTTGCCTTTGTGCCTCAAGAAGAGAGCCCACTACTGTTGGTGGAGACAGAGAGTCCATTGTTAGAAGAAAATGCGAGGATGGAGATGGATCCCAAAGATGATAACGACGACTTAGAAGTGATCCACGAAAATGGGGTTTTATTATTAGAGGAGATGGAGTCGGAGATCGTTGATGCCGATGGAGAAGAGAAGCCATTGAGGGAGAGAGAACCATCAGTATTATCAGATGATGATGATGTACAAGAAAGAAGGACAACGACGACTTCCAAGGAGAAGAAGGATATCTATCATCATCATCATCAGGATGAAATAATACCATTACCACCACAAGAGGACCCAAATGATGCATACCAATATCAATGGGCAACCAAACACCAGCCCCGCACCTTGGAAGAATTCATCTGCAACAACGATAAAGCTCTCCAACTCAAAGCATTAGTAAGAGAGGGTTGTGGCTGTAATCATTTTATATTTGAAGGACCGCCCAACGTTGGAAAAAGATCCATGATACGGGCTATGCTTCGCGAGGTATTTGGCCCTCACAGACTGCAGGTCACAGAAGAATGCAAAGACTTCAACCTCAAGGGGGAAATGGTTGACAAGCTGCAGGTGAAGATAAAAAAATCACTGCATCATGTGGAGATCAACGTATCAGAGACAAAGGGATACGAGAAGCACGTAATTGTTGATTTATTCAACGGAACATATGCAAAGAAGATAAATAATTCCCTGCCTTGTAGCCCTGATAACTGCCAAGCAATTGTATTGTATGAGGCGGAGAAGCTATCAATAGAATCGTTGTTGTATATTAAGTGGCTACTAGAAAAGTATAAAGGATGTAATAAGGTGTTCTTTTGTTGTTCCGACGAATCTAAGCTCCAACCTGTCAAACCACTTTGCACCACTCTCCGCCTTTCACCACCTTCGTCCCAAGAGATTCTTCAGATTTTGCAACATATTGGAGAGAAAGAAGGCAAACAATTATCAAGTGGCTTAGTCAATAAGATTATTTCCAGGTCAAGAAACAATCTCCGCCAAGCCATTCGTTCATTGGAAGCAACTTGCCGAAACAAGGATATCCTCACAGAAGAAGATTTAATTTTAACAGGATGGGAATATGATATTTTGAATATTTCCAAAAGTGTGTTGGAAGAGCAAAGTCCAAGACA 1772 0.4312 MQQMTSPTFQHQSSVSKNRNGLHSNKHGSGSKSSSSFRSILSVNVNLNVQKQHPYHHHMMMKDSNDESSNSNSSPYYKGLTDQSLAIIAPSSPPHHHDHATIPCYPLTPLPLPVRIAVTNNNNNLHPHHLSSSGSGGQGQEGHVQSPYYKGLTDYSLVIGSWSSHNPTSTNPSYHHQSSPYYRGLTDFSLVLHDDHHHHHDVAFVPQEESPLLLVETESPLLEENARMEMDPKDDNDDLEVIHENGVLLLEEMESEIVDADGEEKPLREREPSVLSDDDDVQERRTTTTSKEKKDIYHHHHQDEIIPLPPQEDPNDAYQYQWATKHQPRTLEEFICNNDKALQLKALVREGCGCNHFIFEGPPNVGKRSMIRAMLREVFGPHRLQVTEECKDFNLKGEMVDKLQVKIKKSLHHVEINVSETKGYEKHVIVDLFNGTYAKKINNSLPCSPDNCQAIVLYEAEKLSIESLLYIKWLLEKYKGCNKVFFCCSDESKLQPVKPLCTTLRLSPPSSQEILQILQHIGEKEGKQLSSGLVNKIISRSRNNLRQAIRSLEATCRNKDILTEEDLILTGWEYDILNISKSVLEEQSPR 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122416g00001 590 MobiDBLite consensus disorder prediction 1 37 - -
Stsc122416g00001 590 Gene3D - 320 509 IPR027417 -
Stsc122416g00001 590 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 321 589 - -
Stsc122416g00001 590 FunFam replication factor C subunit 3 510 568 - -
Stsc122416g00001 590 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 567 IPR027417 -
Stsc122416g00001 590 MobiDBLite consensus disorder prediction 261 299 - -
Stsc122416g00001 590 MobiDBLite consensus disorder prediction 123 142 - -
Stsc122416g00001 590 MobiDBLite consensus disorder prediction 123 144 - -
Stsc122416g00001 590 CDD HLD_clamp_RFC 509 567 - -
Stsc122416g00001 590 Gene3D - 510 570 - -
Stsc122416g00001 590 FunFam Replication factor C subunit 3 320 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122416g00001 Stsc-Chr122416 95 2888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122416g00001 322 590 Core DNA Replication Machinery Family AT5G27740 28.986 7.78e-33 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122416g00001 K10756 - gmx:102664389 491.115