Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122400g00001 ATGGCATCGCTGCTCACTGAAATTCAGAGATGTCTGAGGCAATCACATGTATGGAGGTTTGTTGGTCTGGCTTCAACCATAGTTGGACTATCATGTTATGCTCTCAGCTCCTCCTTTAACCATCTGTTCGGAAAATGGAACTTTCTGAAAATCTTTATCCATATTATTTCCAGTATCATCATTTGTTTCATGATTTTATTTGCAAAGGCATGGCAATTCTCCGCTGCTTTGAGATTCAAAGCTCACCTGTCTTTTCTGGCTTTGACAATAACTGCTGTGTACTCGTTTTTCTTGGATAGAGATGTGAACGGAAAACCGGATGTTTACAGCCTAATTTCTTGTGCTGCCTTTGCTGTTATGTCTCTTTGCTTGTCGAGGCAGAGCCACTTTGGATTTGAAGTGGATTTATTGTATTTCTTCTTGGGAGCTTTGATAGTACAACTCATGAAGATACATTTGTTTTTAGGTATCTTTGGAGTGGGATTCAGCTACTCCCTCATCATTCTCCGTTCCTCTCTTGATTTTGAAAATGAGCATCAGAGATTGGACGATCAATATTACTCAGTTGTACAAGTTGACTCAGATTCACAACAACAAGGAGCTGCTCAAGTGGATTCCGATTCGCAACAAGTCAGCACTCATATTGTTCTTATCAAGTCACAATTCACTGCTTGTATAAAGGCTCTTAAGTCATGTGATAGGGAGATAATTCATATGCTTTCTAATTATGCAAAAGATTACACCAAAACCCTTCTTGAATCCAACTATGAGGACCCTGTACTGGTTGACAGCAACATGGTGATTGATGCGCTGCCGTTGAACCTTATCAATGACCTCCAAGAAGCAGTGAAGTTGATGCTCACTAATGGATTTCAGGAGGATTGTTACGATTTGTATATCAGTTGCCGCAGGGAATACTTACAAGCGGAGTTCATTATGGACCAATTACATTTTGCAGATTGCTTTACATTTGAGAGCTCTCACTTCAATACATTTGACTTTTTTCCCATGAGGGTAAAAGTATTCAAGGCATTGGATGACTTGATTCCAAAGTATGAATCATTGTTTTGCGAGCAGTCTTGTGATTCAATTAGAAATGAAGCTATCAATACTTGGAAGAGACTGAGGAAAGCAACCAAAGGGATTTTCATGGAGTTGGAGGATTGGATTCTCAATGATAAAGCCATATCAGATGTTCCTGGAGGGCTTTATCCAATCTGCAGCAAAGTGATAGAGTTCCTTAACGGTGTTTTTGAAGCCTGGATCACCCTGCCACTTGAGAATTTTTTCGAAGAGCAACCCATGGTTGTTTACAGGAAGGGAAGGCCTTCTACATTCTTTATCCAGCTGGTTAGGATAATAGAGCTTCTAGAGAGGCACATTGAACAAAGTGCAAAGAAATGGAATTCAGAAACAGGCTCTATGTATAATAATGGCATAATTGGACTACTGAATGCAAAAGTCAGACAAAACCTTGAGGACTATCTAACAATATCATGGGATGAGGTTATTGGGCTTTTGAAGGTGGGCAATAAAGAACCATATTCTCTTGAGTTTATAAAAGAAAATCTCAAATTGTTCAACATGCACTTTAAGGAAATATGCAAGGTTCAGTCTACATGGTTTGTTCTTGATGTGCGCCTAAGAAAAGAGATAAGAGAGTCCATAGATAATATGTTGTTACCAATATATGGAGTCTTTATTGGAAAGTTGTATGATGTTCTTGGATCACATGCCAATGAGTACATTGAGTACTCAATGCTTGACATTGATGCTCTGCTCAATGATTTGTTTCGTGGATAA 1803 0.3894 MASLLTEIQRCLRQSHVWRFVGLASTIVGLSCYALSSSFNHLFGKWNFLKIFIHIISSIIICFMILFAKAWQFSAALRFKAHLSFLALTITAVYSFFLDRDVNGKPDVYSLISCAAFAVMSLCLSRQSHFGFEVDLLYFFLGALIVQLMKIHLFLGIFGVGFSYSLIILRSSLDFENEHQRLDDQYYSVVQVDSDSQQQGAAQVDSDSQQVSTHIVLIKSQFTACIKALKSCDREIIHMLSNYAKDYTKTLLESNYEDPVLVDSNMVIDALPLNLINDLQEAVKLMLTNGFQEDCYDLYISCRREYLQAEFIMDQLHFADCFTFESSHFNTFDFFPMRVKVFKALDDLIPKYESLFCEQSCDSIRNEAINTWKRLRKATKGIFMELEDWILNDKAISDVPGGLYPICSKVIEFLNGVFEAWITLPLENFFEEQPMVVYRKGRPSTFFIQLVRIIELLERHIEQSAKKWNSETGSMYNNGIIGLLNAKVRQNLEDYLTISWDEVIGLLKVGNKEPYSLEFIKENLKLFNMHFKEICKVQSTWFVLDVRLRKEIRESIDNMLLPIYGVFIGKLYDVLGSHANEYIEYSMLDIDALLNDLFRG 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122400g00001 600 Pfam Exo70 exocyst complex subunit 460 596 IPR046364 GO:0000145|GO:0005546|GO:0006887
Stsc122400g00001 600 PANTHER EXOCYST COMPLEX PROTEIN EXO70 202 313 IPR004140 GO:0000145|GO:0006887
Stsc122400g00001 600 SUPERFAMILY Cullin repeat-like 226 598 IPR016159 -
Stsc122400g00001 600 Gene3D Exocyst complex component Exo70 310 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122400g00001 Stsc-Chr122400 8490 10563 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122400g00001 316 600 EXO70 exocyst subunit family AT5G58430 36.593 1.20e-48 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122400g00001 - - aip:107607007 454.907