Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122390g00002 ATGTGGAAATTTAACCCCTTCACACACAAGGAGGCAGCTGGCCTGGAAGGCCGAGTTATAGATGTCGGCAATCTTAAGATAAATGTCCAGAAGGCCATTGCAGAAGGAGGGTTCTCTTGTGTTTACTTAGCACGTGATGCTTTACATATGTCAAAGCAATATGCGTTGAAGCACATAATATGCAATGATGATGAATCACTTGCATTGGTAAAGAAGGAGATATCTGTGATGAAGTCACTGGTAGGACATCCCAATGTAGTCACACTTCATGCCCATGCAATATTTGATATGGGCAGGACAAAAGAGGCATTTCTTGTAATGGAATATTGCGAGAAGTCCCTAGTTAGTGTGCTGGAAAGCCGAGGAGCAGGTTATTTTGATGAGAATCAGGTTTTCTTAATCTTCAGGGATGTATGTAATGCTGTTTTCGCTATGCACTGCCAGTTCCCACCCATTGCGCACCGAGACTTGAAAGCAGAGAATCTTTTGTTAGGTTCAGATGGTTTATGGAAGTTGTGTGACTTTGGAAGCACTTCCACCAATCACAAGCGTTTTGAGAAGCCAGAAGAAATGGGAATCGAGGAAGACAATATCAGGAAGTACACAACCCCTGCCTACAGGGCCCCTGAGATGTGGGATCTCTTCCTTAGAGAAGTCATCAATGAGAAAGTGGACATATGGGCACTAGGTTGTCTTCTTTTTCGCATATGCTATTTCAAAAGTGCATTTGACGGGGAATCAAAGCTCCAAGTCTTAAATGGAAACTATCGGATTCCTGATTTGCCAAGATACAGTTCAGCTGTCACGGATTTAATCAGAGACATGCTTCAAGCTAGACCAGATGACAGACCAGATATCACGCAGGTCTGGTTTCGTGTTAATGAGCAGCTACCTATTAAGTTACAGAAATCATTACCTGACAGGCCACCAGAGTTGCCTGCTTCCAACCATCCAGAAGGTTCTTCAATGTCCAATAATAAATCACACCCAGCACCTCGTAGGAGTCCCCCTCCTCCACCTTCATCTCTAGAATCCAAACCAACAGTACAGTCATCCGTTGCTTCTAGGGGTGGTGGAAATGGGGGGCAGCTTGGTGCTTTCTGGTCAACTCAGCATGCAAATGATTCAATCGTCTCCGAGGTAAAGAGCAAACCTGTATTTGATGAAGAACTATCTAACCATAACACATTAAAACACGATATAACTCCTCTGGGCAATGATCAGTTACCCAAAAGTGTTGGTAGTAACAAAGTGGTCAACACACAAACTCATTCAGTAATTAGCAGTGTACATGGGAAGTTACACAAGCCTGACACTGCATCATCCAAGGATTTCGAATTGAACTTTTTTAAGGATAAAGGTCAGACGAATGAGAGGCGAGTGTCAAATATGGACAATAAAGCTACCTTTCAAGATCAGGCTTTTAGCACTTTTGTTGCGGAATTTGACACTGCTAAGCTCAGTCCTGGACTTAAGTCCGAAAGAGAAGCAGCATTAGAAGCTGAGGTGGAGAAACTGAAAGGGCAACTGAAGGAAGCAAACATAGAGAAAGCTGAAATCACTTCAAAGTATGAAAAGCTTTCTGCTATATGCCGATCGCAAAGGCAAGAATTACAGGATCTCAAACAGGCACTTGCAGCAAAAACTCCCTCACCAAAAAGGGAGGGTATGAGGACCTCTCCTGGACTTCCATCATCTGCATCCACGCAGGATAAAACTGAATGGAAGACTCCTGGTTCAGAACCAAAGTCATGGCAGGCTTTCCCTGAGGAACCTCGACAACAAACCTCCTTTTCAGCTGACAATGCCTCGAAATCTGTCAGGACTAGAAATAATCAGCAGAAGCTGCAGCCGGCTCCAGCAGCTGCTAACTTTGATTCGTGGGGTTTTGGATCGGATAACTTCAGTGCTGTAAAAGCTGGTAGCCCTCAGATGCCCAGACCTGGTGAAGGGAGTAATTCTCAGGCATTTGGTGAAGCAAAGGCATTTGAGAACAAATCAACTACTCCACCTGCTGGATGGGCTGGATTTTAA 2034 0.442 MWKFNPFTHKEAAGLEGRVIDVGNLKINVQKAIAEGGFSCVYLARDALHMSKQYALKHIICNDDESLALVKKEISVMKSLVGHPNVVTLHAHAIFDMGRTKEAFLVMEYCEKSLVSVLESRGAGYFDENQVFLIFRDVCNAVFAMHCQFPPIAHRDLKAENLLLGSDGLWKLCDFGSTSTNHKRFEKPEEMGIEEDNIRKYTTPAYRAPEMWDLFLREVINEKVDIWALGCLLFRICYFKSAFDGESKLQVLNGNYRIPDLPRYSSAVTDLIRDMLQARPDDRPDITQVWFRVNEQLPIKLQKSLPDRPPELPASNHPEGSSMSNNKSHPAPRRSPPPPPSSLESKPTVQSSVASRGGGNGGQLGAFWSTQHANDSIVSEVKSKPVFDEELSNHNTLKHDITPLGNDQLPKSVGSNKVVNTQTHSVISSVHGKLHKPDTASSKDFELNFFKDKGQTNERRVSNMDNKATFQDQAFSTFVAEFDTAKLSPGLKSEREAALEAEVEKLKGQLKEANIEKAEITSKYEKLSAICRSQRQELQDLKQALAAKTPSPKREGMRTSPGLPSSASTQDKTEWKTPGSEPKSWQAFPEEPRQQTSFSADNASKSVRTRNNQQKLQPAPAAANFDSWGFGSDNFSAVKAGSPQMPRPGEGSNSQAFGEAKAFENKSTTPPAGWAGF 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122390g00002 677 MobiDBLite consensus disorder prediction 543 677 - -
Stsc122390g00002 677 Coils Coil 496 544 - -
Stsc122390g00002 677 MobiDBLite consensus disorder prediction 561 575 - -
Stsc122390g00002 677 MobiDBLite consensus disorder prediction 302 367 - -
Stsc122390g00002 677 Coils Coil 675 677 - -
Stsc122390g00002 677 ProSiteProfiles Protein kinase domain profile. 27 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc122390g00002 677 CDD STKc_GAK_like 26 298 - -
Stsc122390g00002 677 Pfam Protein kinase domain 29 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc122390g00002 677 MobiDBLite consensus disorder prediction 345 367 - -
Stsc122390g00002 677 SMART serkin_6 27 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc122390g00002 677 SUPERFAMILY Protein kinase-like (PK-like) 29 339 IPR011009 -
Stsc122390g00002 677 Gene3D Transferase(Phosphotransferase) domain 1 10 306 - -
Stsc122390g00002 677 MobiDBLite consensus disorder prediction 589 620 - -
Stsc122390g00002 677 PANTHER SERINE/THREONINE PROTEIN KINASE 1 661 - -
Stsc122390g00002 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Stsc122390g00002 677 FunFam probable serine/threonine-protein kinase DDB_G0280111 10 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122390g00002 Stsc-Chr122390 3158 6108 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122390g00002 26 292 CBL-interacting serine-threonine protein kinases AT5G45810 30.282 9.33e-21 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Stsc122390g00002 Pkinase 4.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122390g00002 K08853 - gmx:100808507 1021.15