Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc122363g00001 | ATGGCTGCAAAGTTGCTGCATTCTTTAGCAGATGAAAACCCAGATTTGCAGAAGCAAATTGGATGCATGACTGGGATTTTCCAACTGTTTGATCGTCACCAGATAGTTACCCCGCGCGGCATTAGCCACAAGAGGCTTCCTCCTGGTAATTCCCACTCCAATTTTGACAGCATGAGAAGAGATTCTAATGGCATACACCATCGGCAAACAGCAGCTGATATGAACTTAAACCAGGGTGTGAGTGAAAGACAAAGAATTTCAACAGAATCATCAAGAGCCTCATTCTCTTCCTCATGTTCGTCATCAGTATCTTCTTTGGACTGTAAAGCTCAAGCAGATGCTTCCTTCGACCGGATTACTTTTCCTGAAACTCCTAGAAGGGACCAAGTTATGAGCCAAACAAGTACCTCTCCAAATTTGGGTCACCAGTCCCTTGACCTGAGGGATGTGGTAAAGGACTCCATGTACAGAGAGGCCAGAGGACTATCAGTGAAGACTACAGTCAAAGAAGAAGTTTCCGTTCGTGCAACAAAGCGGAGGGATTCACCGAGACCTCTTCAGCTGTCCATTTCTGATTATGCATATGATAGAGTTGGAATTGATGGAAAACAAAGTGTGCCAACTGATCTAAAGGAGTCTATCCGAGTTCTTTCTAAGCTTACAGAAGCCCCTTGGCATTATGGTGAAGGTAGAGACCTTCGAAGGTTGCCTTATGAAGTAAAAGATGGACAATGGCATTCCATCTCAAAGGATGCTCCTCGGTTTTCTTATGATGCAAGGGAAATACATCGATACTCTTTTGAATTGCGAGATACCATCAAATCCACACCAAGGCTAAAAGAGCTTCCTAGACTTTCCCTTGACAGCAGGGAAGTTTCTTGGCACACTTACACCTCTGATTCAAAACCCAATCGTCTCTCAAGAAATTTCAGTACTGGTACTTCCAACTCAGATGACAAAGTCTCGAATCTACAAATACAGCCTTCAGCATCACAGAGCCGGCCACCGAGTGTTGTAGCAAAATTAATGGGGTTGGAAGCATTGCCAGCGTCCAATTTGGCCAGTGAGACTCATTCAATTCTGAGTGAAACTGGCTCAAGTCAAGGTGATGATCAGTTTTCAAGATCATCAAAAAATGGACTCATTATGCCACTCCGAGTTTCCAACTCCCCAAAAAGCTCGATGAAAGACCTGAGTTCCCCACGCAGGAAGAACCCTGATTTGGTTGTGAAACCTATCTCAAGTTCAAGGCATCCTATTGAACCTGCACCGTGGAAGCGGCGAGATAGAAATCAAAGTTCACCAAGACCAAGTTCCGGGGCCATGAAGGCTACAAGAACAACAGATTCATTCCCTTCAGTTTACAGTGAAGTTGAGAAGAGATTGAAGAATCTTGAATTTGAGCAATCTGGAAGGGATCTCAGAGCTCTCAAACAGATACTAGAAGCAATGCAAGCAAAGGGGCTGCTAGAAGAACAAGCTTCAAATCTTGTAGGAGATCAAAGAGGCCATGAACCAAAACCTCTAACTCAGAATTCTAGGACAGCAAGGAAACAAAGTCCTCAGGGAAACAATATTGCATCTTCAACTTTCAGGGGATATGACTCAGCAAGGACCACTGAATCTCCAATTGTAATCATGAAACCTGCAAAGCACATTGAGAAAAATGGAATTTCATCTTCTTCAGTTATTCCACTTGTTGATCTTTCTGATTCCCATAAACTCCAGAGTGTGGGAATGGGTGTACGTTCTGGTAATAGAAAGGATACAGGTTCTGGTCGAATAACAAAAGATCAGTCTCCAAGAAACAATTACAGGGAAGCTTCTACTAGCTCCAGTGAAAAGAAAGCAAGTAGCAAGACTATAAGATCAACTCAATCACAACCAAGTTCAGTAAAGAACTCAGGGTCTGTTAGCCCAAGATTGCAACAAAAGAAGTTAGAACTGGAGAAGCGCTCTCGCCCACCAACTCCTCCATCAGATTTAAGTAAACCGAGAAGGCAATCTGGTAAGCAGACCACAGAATCAGGTTCTCCGGGTCGAAAACTGAGGCATAAAGTCCCTATTTCACATCAAAGTGATGACCAACTTAGTGAAATAAGCAATGAACCAAGAAGTTTGAGTTTCCAAGGGGATGAAGCATCACTACAATCAGGTAGTGCCACTATTGAGTCAAAGATGGATATGGAAGTAGCCAGCAATTTACAACCTGCTGAAAGCCAAAGCCCATCTCTAAAGGTTTTTGAGCAGGTGGTTTCTGGAAAACTACAGAAGAAATCAACTCTGATGTTGGATGAGGATGAGCCTATTTCAGAACTTGCAATGGATGCTCCAGATCATCCGAGCCCTGTATCGGTTCTGGACGGCTCAGTATACAGAGAGGGTGTGCTATCCCCAGTCAAGCTCATATACAATGCTTCCAAAGCTGGTGATACTCAATCTAAAGAAGAAGAGTATGAATGTCAGTGGAACACTGCAGATGATAGCCTTTCAGTTAACAGTGAGATCAACCGCAAGAAATTGCAAAGCATAGATCACCTTGTTAAGAAGCTTAGACGGCTAAACTCGAGTCATGACGAGGCTAGAGTCGATTACATTGCTTCCCTTTGCGAAAACTCAAATCCAGACCACAGATACATATCAGAAATACTACTGGCTTCAGGTCTCCTACTCAGAGATTTGAGTTCAGAACTGCTGACATTTCAGCACCGCTCGTCGGGTAATCCCATTAACCCCGAGTTGTTCCTTGTGTTGGAGCAGACCAAGGCAAGTAGCTTTCTTTCTAAAGAAGAAATCAGCACTGAAAAAGTTGATTACAAGAAGACAAACACAGACAAGTCTCACAGGAGACTCATCTTTGATGCTGTGAATGAGATTCTTGGCAAGAAACTAGCTTCTTCTCCTGAACCATGGTTGAAGCCTAATGGACTAGCAAAGAAGAACCTCAGTGCACAGAAACTTCTAAAAGAGCTGTGCTTTGGGATAGAGAAAATTCAAGCGAAGAAGCCCGAATGCACAGAAGATGAAGGTGATGGCATAAAAAGTCTACTATGTGAAAATGTTATGAATGGAGCAGAAAGTTGGACAATCTTCCATGGTGAAACATCTGGGGTTGTGTTGGATGTTGAGAGACTGATATTTAAGGACTTGATTGATGAGGTTGTGATTGGGGAATCAACTGGCTTGAGAATCAAGCCAGGTAGGCGCAGGAAGCTATTCGGAAAATAA | 3228 | 0.4322 | MAAKLLHSLADENPDLQKQIGCMTGIFQLFDRHQIVTPRGISHKRLPPGNSHSNFDSMRRDSNGIHHRQTAADMNLNQGVSERQRISTESSRASFSSSCSSSVSSLDCKAQADASFDRITFPETPRRDQVMSQTSTSPNLGHQSLDLRDVVKDSMYREARGLSVKTTVKEEVSVRATKRRDSPRPLQLSISDYAYDRVGIDGKQSVPTDLKESIRVLSKLTEAPWHYGEGRDLRRLPYEVKDGQWHSISKDAPRFSYDAREIHRYSFELRDTIKSTPRLKELPRLSLDSREVSWHTYTSDSKPNRLSRNFSTGTSNSDDKVSNLQIQPSASQSRPPSVVAKLMGLEALPASNLASETHSILSETGSSQGDDQFSRSSKNGLIMPLRVSNSPKSSMKDLSSPRRKNPDLVVKPISSSRHPIEPAPWKRRDRNQSSPRPSSGAMKATRTTDSFPSVYSEVEKRLKNLEFEQSGRDLRALKQILEAMQAKGLLEEQASNLVGDQRGHEPKPLTQNSRTARKQSPQGNNIASSTFRGYDSARTTESPIVIMKPAKHIEKNGISSSSVIPLVDLSDSHKLQSVGMGVRSGNRKDTGSGRITKDQSPRNNYREASTSSSEKKASSKTIRSTQSQPSSVKNSGSVSPRLQQKKLELEKRSRPPTPPSDLSKPRRQSGKQTTESGSPGRKLRHKVPISHQSDDQLSEISNEPRSLSFQGDEASLQSGSATIESKMDMEVASNLQPAESQSPSLKVFEQVVSGKLQKKSTLMLDEDEPISELAMDAPDHPSPVSVLDGSVYREGVLSPVKLIYNASKAGDTQSKEEEYECQWNTADDSLSVNSEINRKKLQSIDHLVKKLRRLNSSHDEARVDYIASLCENSNPDHRYISEILLASGLLLRDLSSELLTFQHRSSGNPINPELFLVLEQTKASSFLSKEEISTEKVDYKKTNTDKSHRRLIFDAVNEILGKKLASSPEPWLKPNGLAKKNLSAQKLLKELCFGIEKIQAKKPECTEDEGDGIKSLLCENVMNGAESWTIFHGETSGVVLDVERLIFKDLIDEVVIGESTGLRIKPGRRRKLFGK | 1075 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc122363g00001 | 1075 | MobiDBLite | consensus disorder prediction | 506 | 536 | - | - | |
| Stsc122363g00001 | 1075 | MobiDBLite | consensus disorder prediction | 358 | 450 | - | - | |
| Stsc122363g00001 | 1075 | PANTHER | LONGIFOLIA PROTEIN | 1 | 1073 | IPR033334 | GO:0051513 | |
| Stsc122363g00001 | 1075 | MobiDBLite | consensus disorder prediction | 358 | 396 | - | - | |
| Stsc122363g00001 | 1075 | MobiDBLite | consensus disorder prediction | 596 | 642 | - | - | |
| Stsc122363g00001 | 1075 | MobiDBLite | consensus disorder prediction | 497 | 536 | - | - | |
| Stsc122363g00001 | 1075 | MobiDBLite | consensus disorder prediction | 126 | 142 | - | - | |
| Stsc122363g00001 | 1075 | MobiDBLite | consensus disorder prediction | 678 | 692 | - | - | |
| Stsc122363g00001 | 1075 | MobiDBLite | consensus disorder prediction | 296 | 337 | - | - | |
| Stsc122363g00001 | 1075 | MobiDBLite | consensus disorder prediction | 70 | 96 | - | - | |
| Stsc122363g00001 | 1075 | MobiDBLite | consensus disorder prediction | 663 | 677 | - | - | |
| Stsc122363g00001 | 1075 | MobiDBLite | consensus disorder prediction | 577 | 718 | - | - | |
| Stsc122363g00001 | 1075 | Pfam | DUF761-associated sequence motif | 331 | 352 | IPR032795 | - | |
| Stsc122363g00001 | 1075 | MobiDBLite | consensus disorder prediction | 693 | 718 | - | - | |
| Stsc122363g00001 | 1075 | MobiDBLite | consensus disorder prediction | 296 | 336 | - | - | |
| Stsc122363g00001 | 1075 | MobiDBLite | consensus disorder prediction | 434 | 450 | - | - | |
| Stsc122363g00001 | 1075 | MobiDBLite | consensus disorder prediction | 120 | 142 | - | - | |
| Stsc122363g00001 | 1075 | Pfam | Domain of unknown function (DUF4378) | 876 | 1053 | IPR025486 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc122363g00001 | Stsc-Chr122363 | 6440 | 10817 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc122363g00001 | 140 | 1074 | TRM (TON1 Recruiting Motif) Superfamily | AT1G74160 | 46.981 | 0.0 | 634 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc122363g00001 | - | - | gmx:100787391 | 1325.46 |