Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122352g00001 ATGGAAACCAAGGCTGAAGCTGTTGTTGCATCTCTTCCTCTTATGTCACACTCTTCTTCTGCTGAATCCAGCTCCAAACACCTTTCTCCCATGGAACTTGGAATTGACAATTTTGGGTGCAAGCATTACAGGAGGAGATGCAAGATTAGAGCACCATGCTGTGATGAGGTTTTTGATTGTAGGCATTGCCACAACGATGCTAAGAACTCTGAGGAGATTAATGTTAATGATCGTCATGACATCCCACGCCATGAAATTGACAAGGTCATTTGTTCTTTGTGTGATACAGAACAAGATGTTCAACAGTACTGCATAAACTGTGGGGTATGCATGGGAAAATATTTTTGTGGCACTTGCAAATTCTTTGATGATGATGTTTCAAAGAATCAATACCACTGTGATGATTGTGGCATCTGCAGAACTGGAGGCAAGGATAACTTTTTCCATTGCAAGAAATGTGGATGCTGCTACTCTAAATTAATGGAAGATGGTCATCGCTGTGTGGAAAGAGCAATGCATCACAATTGCCCTGTTTGCTTTGAGTATCTATTTGAGACATTAAGGGATATTACTGTATTGCCTTGTGGGCATACCATACATTTGGAGTGTGTCAAAGAGATGGAAAAACATCATAGGTACTCTTGCCCGGTTTGTTCCAAATCAATCTGTGACATGTCAAGTTTATGGAAGAAGCTTGATCAAGTGATTGCCTCAACTCCAATGCCAGAAAGCTACAGAAACAAGAAGGTGTGGATTCTATGTAATGATTGTGGAGTGAACTCTCAAGTGCAATTCCATGTTGTGGCCCATAAGTGCTTAAGTTGCAACTCATACAACACAAGGCAGATACAGGGGAACCCTAATAATACCTCATGTTCTTCAAGAGTCACTGAGATGGTTAGATAA 906 0.4084 METKAEAVVASLPLMSHSSSAESSSKHLSPMELGIDNFGCKHYRRRCKIRAPCCDEVFDCRHCHNDAKNSEEINVNDRHDIPRHEIDKVICSLCDTEQDVQQYCINCGVCMGKYFCGTCKFFDDDVSKNQYHCDDCGICRTGGKDNFFHCKKCGCCYSKLMEDGHRCVERAMHHNCPVCFEYLFETLRDITVLPCGHTIHLECVKEMEKHHRYSCPVCSKSICDMSSLWKKLDQVIASTPMPESYRNKKVWILCNDCGVNSQVQFHVVAHKCLSCNSYNTRQIQGNPNNTSCSSRVTEMVR 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122352g00001 301 ProSiteProfiles Zinc finger CTCHY-type profile. 111 175 IPR017921 -
Stsc122352g00001 301 Pfam Zinc-ribbon 223 281 IPR039512 -
Stsc122352g00001 301 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 20 287 - -
Stsc122352g00001 301 Pfam CHY zinc finger 40 121 IPR008913 GO:0008270
Stsc122352g00001 301 Pfam Ring finger domain 175 218 IPR001841 -
Stsc122352g00001 301 SMART ring_2 176 218 IPR001841 -
Stsc122352g00001 301 ProSiteProfiles Zinc finger CHY-type profile. 33 109 IPR008913 GO:0008270
Stsc122352g00001 301 Gene3D - 249 289 - -
Stsc122352g00001 301 ProSiteProfiles Zinc finger RING-type profile. 176 219 IPR001841 -
Stsc122352g00001 301 SUPERFAMILY Zinc hairpin stack 112 169 IPR037275 -
Stsc122352g00001 301 SUPERFAMILY CHY zinc finger-like 37 111 IPR037274 GO:0008270
Stsc122352g00001 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 248 IPR013083 -
Stsc122352g00001 301 SUPERFAMILY RING/U-box 175 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122352g00001 Stsc-Chr122352 34 2758 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122352g00001 38 294 C2H2 Transcription Factor Family AT3G18290 39.163 4.61e-56 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122352g00001 K10144 - gmx:100812709 531.561