Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122345g00002 ATGAGCACCTCCTCCGGCGGAGACACGTCGGCGTCGAATAAGGACAAGGAACGGGTGAGCAAGACGTCACTGATTCACTGGCACTCCCACCATAACGACGCCGCAGCGGTTCGGAAGCTTCTAGAAGAGGATCCCTCCCTCGTGCAGGCACGTGACTATGACAACCGCACGCCCCTCCACGTGGCCTCCCTCCACGGCTGGGCCGACGTTGCCAGCTGTCTCATCGAGTTCGGCGCTGACGTCAACGCCCAAGACCGATGGAAAAACACCCCTCTGGCTGATGCAGAAGGAGCTAAGAGGACTTCGGTGATTGAGCTTTTGAAGTCACGTGGAGGATTGTCTTATGGCCAAAATGGTAGTCATTTAGAACCTAGGTCTGTTCCACCCCCATTGCCTAACAAGTGTGATTGGGAAGTTGACCCTACTGAGCTGGACTTCTCAAATTCAATTTGTATTGGAAAGGGATCTTTTGGAGAGATTTTAAGAGCTCATTGGCGTGGAACACCTGTTGCTGTCAAGCGCATTCTTCCAGCTCTTTCAGATGATAGATTGGTGATTCAAGACTTCAGGCATGAGGTTAATTTGCTAGTGAAACTTCGACACCCAAATGTTGTTCAATTTCTTGGAGCTGTTACTGATAGAAAGCCTCTAATGTTGATTACTGAGTATCTAAGAGGGGGTGATCTTCATAGGTACCTCAAGGTTAAAAGTTCAGTTAGTACTTCGACAGCAATCAACTTTGCCATGGATATTGCCAGAGGGATGGCTTATCTTCACAGTGAACCAAATGTTATAATTCATCGAGATCTCAAGCCAAGGAATGTTCTTTTGGTCAATTCTAGTGCTGACCATTTAAAAGTAGGAGATTTTGGACTTAGCAAGCTTATTAAGGTCAAAAGTTCTCATGATGTGTACAAGATGACTGGTGAAACTGGAAGTTACCGCTATATGGCTCCTGAAGTTTTCAAACACCGGAGATATGACAAGAAGGTTGATGTGTTCTCCTTTGCCATGATCTTGTATGAGATTCTTGAAGGTGAACCACCTTTTACAAATTTAGAACCTTATGAGGGAGCCAAGCATGTGGCTGAGGGACACAGACCAATTATTCGAGCGAAAGGTTATGGTCCAGAGCTGCGAGAGTTAATAGAGCTTTGTTGGTCTGGTGACATGAATCAAAGACCTTCCTTCATAGATATCCTTAAACGGCTTGAGAAGATCAAGGAAAAACCTTCAGAGCATCATTGGCACTTGTTCTCTTCATAA 1266 0.4581 MSTSSGGDTSASNKDKERVSKTSLIHWHSHHNDAAAVRKLLEEDPSLVQARDYDNRTPLHVASLHGWADVASCLIEFGADVNAQDRWKNTPLADAEGAKRTSVIELLKSRGGLSYGQNGSHLEPRSVPPPLPNKCDWEVDPTELDFSNSICIGKGSFGEILRAHWRGTPVAVKRILPALSDDRLVIQDFRHEVNLLVKLRHPNVVQFLGAVTDRKPLMLITEYLRGGDLHRYLKVKSSVSTSTAINFAMDIARGMAYLHSEPNVIIHRDLKPRNVLLVNSSADHLKVGDFGLSKLIKVKSSHDVYKMTGETGSYRYMAPEVFKHRRYDKKVDVFSFAMILYEILEGEPPFTNLEPYEGAKHVAEGHRPIIRAKGYGPELRELIELCWSGDMNQRPSFIDILKRLEKIKEKPSEHHWHLFSS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122345g00002 421 MobiDBLite consensus disorder prediction 1 20 - -
Stsc122345g00002 421 CDD STKc_MAP3K-like 152 404 - -
Stsc122345g00002 421 SMART ANK_2a 20 49 IPR002110 GO:0005515
Stsc122345g00002 421 SMART ANK_2a 54 83 IPR002110 GO:0005515
Stsc122345g00002 421 Gene3D - 3 110 IPR036770 -
Stsc122345g00002 421 ProSiteProfiles Protein kinase domain profile. 146 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc122345g00002 421 FunFam serine/threonine-protein kinase STY46-like 139 225 - -
Stsc122345g00002 421 Pfam Protein tyrosine and serine/threonine kinase 152 404 IPR001245 GO:0004672|GO:0006468
Stsc122345g00002 421 Gene3D Transferase(Phosphotransferase) domain 1 226 418 - -
Stsc122345g00002 421 ProSitePatterns Protein kinases ATP-binding region signature. 152 173 IPR017441 GO:0005524
Stsc122345g00002 421 Gene3D Phosphorylase Kinase; domain 1 138 225 - -
Stsc122345g00002 421 FunFam Integrin-linked protein kinase family 225 419 - -
Stsc122345g00002 421 PIRSF ILK 1 421 - -
Stsc122345g00002 421 SUPERFAMILY Protein kinase-like (PK-like) 145 412 IPR011009 -
Stsc122345g00002 421 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 76 408 - -
Stsc122345g00002 421 ProSiteProfiles Ankyrin repeat region circular profile. 54 86 - -
Stsc122345g00002 421 SMART serkin_6 146 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc122345g00002 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Stsc122345g00002 421 Pfam Ankyrin repeats (3 copies) 21 85 IPR002110 GO:0005515
Stsc122345g00002 421 ProSiteProfiles Ankyrin repeat profile. 54 86 IPR002110 GO:0005515
Stsc122345g00002 421 PRINTS Tyrosine kinase catalytic domain signature 221 234 IPR001245 GO:0004672|GO:0006468
Stsc122345g00002 421 PRINTS Tyrosine kinase catalytic domain signature 375 397 IPR001245 GO:0004672|GO:0006468
Stsc122345g00002 421 PRINTS Tyrosine kinase catalytic domain signature 259 277 IPR001245 GO:0004672|GO:0006468
Stsc122345g00002 421 SUPERFAMILY Ankyrin repeat 24 112 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122345g00002 Stsc-Chr122345 7508 13999 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122345g00002 13 421 MAP Kinase Kinase Kinase AT1G14000 81.951 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Stsc122345g00002 PK_Tyr_Ser-Thr 5e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122345g00002 - - gmx:100789273 734.176