Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122335g00001 ATGGCAAGCACACCTATCATTATTCCATCTCACATGAAAGATTGGTCCTACTCTGAATATGGTAACATTGAAGAGACTCTCAAGTTTCATCATAATGTAGCTGTTCCAGAACTCAAGGATGATCAGGTTCTCATTAAGGTTGTGGCTGCAGCTCTTAACCCTGTTGATTATAAGAGGGCCCTTGGAAATTTCAAGAACTCCGACTCTTCTCTGCCGACTTGCCCCGGCTATGATGTTGCGGGCGTGGTAGTGAAAGTGGGAAGCCAAGTGAAGAAGTTCAAAGTTGGAGATGAAGTGTACGGTGACATCAATGAGAATGCATTGAACAATCCAAAGGCTATTGGGTCACTCGCAGAGTATACTGCAGCAGAAGAGAAAGTGTTGGCTCACAAACCCTCCAATTTAAACTTTGTTGAAGCTGCTAGCCTCCCTTTGGCTATCATCACTGCCTACCAAGGTCTTGAAAGAGTTTCTCTTTCTCCCCAACAATCTATCCTTGTTCTTGGAGGTGCTGGTGGAGTTGGAACTCATGTTGTTCAGCTTGCAAAGCATGTGTTTGGGGCATCTAAGGTAGCAGCCACAGCCAGCACTGCCAAATTGGAATTGTTGAGAAATTTGGGAGCAGACTTACTTATTGACTATACCAAGCTCAACTTTGAAGATCTGCCAGAAAAGTTTGATGTAGTCTTTGATGCAGTAGGTCAAAATGAGAGGGCACTGAAAGCTATAAAAGAAGGGGGAAAAGTTGTGACAATAGTAGAGCCTGAAATTCCTCCAGCAATTTGGTACTTACTCAATTCAGAGGGTGCTGTGTTGGAGAAATTAAAACCTTACTTGGAGAGTGGGAAGATCAAGCCAATATTGGACCCTAAAAGCCCTTTTCCATTTTCTAATGCTGTGGAAGCATTTGCATACTTGAAGACTCATAGGGCCACCGGCAAAATAGTCATACACCCCATCCCATGA 966 0.4369 MASTPIIIPSHMKDWSYSEYGNIEETLKFHHNVAVPELKDDQVLIKVVAAALNPVDYKRALGNFKNSDSSLPTCPGYDVAGVVVKVGSQVKKFKVGDEVYGDINENALNNPKAIGSLAEYTAAEEKVLAHKPSNLNFVEAASLPLAIITAYQGLERVSLSPQQSILVLGGAGGVGTHVVQLAKHVFGASKVAATASTAKLELLRNLGADLLIDYTKLNFEDLPEKFDVVFDAVGQNERALKAIKEGGKVVTIVEPEIPPAIWYLLNSEGAVLEKLKPYLESGKIKPILDPKSPFPFSNAVEAFAYLKTHRATGKIVIHPIP 321
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc122335g00001 321 Gene3D - 19 317 - -
Stsc122335g00001 321 Pfam Zinc-binding dehydrogenase 206 317 - -
Stsc122335g00001 321 Gene3D - 154 268 - -
Stsc122335g00001 321 SUPERFAMILY GroES-like 8 167 IPR011032 -
Stsc122335g00001 321 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 6 321 IPR044626 GO:0016628
Stsc122335g00001 321 SMART PKS_ER_names_mod 21 317 IPR020843 GO:0016491
Stsc122335g00001 321 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 135 260 IPR036291 -
Stsc122335g00001 321 CDD MDR_like_2 12 317 - -
Stsc122335g00001 321 Pfam Alcohol dehydrogenase GroES-like domain 41 103 IPR013154 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc122335g00001 Stsc-Chr122335 2629 3983 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122335g00001 69 258 Monolignol Biosynthesis Gene Families AT4G37990 27.727 6.68e-08 51.6
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122335g00001 K18980 - gmx:100791274 475.707