Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122319g00002 ATGGTGAATGCGATGGAGTGGCAGAAGCAGCAACAGCAGAATCAGAATCAGAATCAGCAGAGGAATTTGATCGTCGGAGAGATGACGTATGTGAAGGTGATGACCGATGAGCAGTTAGAGACTCTGAGGAAGCAGATCGCTGTTTATGCCACCATTTGTGAGAAGCTCATTGAGATGCACAAAACTCTCTCTGCTCAGCAAGACCTTGCTGGTGTCAGGCTTGGAAGCATGTATTGTGATCCATTGATGGCCTCCTCTGGCCACAAAATAACTTCGCGGCAGCGGTGGACTCCGACACCTGTGCAGCTTCAGATTCTTGAGACGATATTTGATCAGGGGACTGGAACTCCTAGCAAGGAGAAGATCAAGGAGATTACTGCTGAACTTAGTCAGCATGGTCAAATTTCTGAGACTAATGTCTACAATTGGTTTCAGAACCGCCGTGCTAGATCGAAAAGAAAGCAGCAGAATGTGGCAGCTAGCAATAACACTAACGCCAACACTGAATCAGAGGTAGAGACTGAGGTTGATTCCAAGGATAAGAACTCAAAACCAGAGGAGTTTCAGACTCAGTCAAAGGAAAGCCTTGCTAATGTGGCTGCTCAGAATGTCTGCTTTCATAACCCTGACTTGCCTTACATGAATCCGGAATCCAACAATAAATCAGATTCCATTTTCCCATCAGATGGAAGTCTAACATCTACAAGCAACTTTGGTCATATGCCTGTTTTCAATGGGATATTAGCAAATTCAAGGAGTGATTACCTTGCTGGAAAAATGGAAGCACCTGATAGTTACAACATATACCATGAAGAAGGAGACTACAATATTACAGGTTGA 840 0.4429 MVNAMEWQKQQQQNQNQNQQRNLIVGEMTYVKVMTDEQLETLRKQIAVYATICEKLIEMHKTLSAQQDLAGVRLGSMYCDPLMASSGHKITSRQRWTPTPVQLQILETIFDQGTGTPSKEKIKEITAELSQHGQISETNVYNWFQNRRARSKRKQQNVAASNNTNANTESEVETEVDSKDKNSKPEEFQTQSKESLANVAAQNVCFHNPDLPYMNPESNNKSDSIFPSDGSLTSTSNFGHMPVFNGILANSRSDYLAGKMEAPDSYNIYHEEGDYNITG 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122319g00002 279 PANTHER WUSCHEL-RELATED HOMEOBOX 13 5 274 IPR044559 GO:0003700
Stsc122319g00002 279 SMART HOX_1 91 158 IPR001356 GO:0003677
Stsc122319g00002 279 Gene3D - 95 160 - -
Stsc122319g00002 279 MobiDBLite consensus disorder prediction 152 193 - -
Stsc122319g00002 279 MobiDBLite consensus disorder prediction 172 188 - -
Stsc122319g00002 279 Pfam Homeodomain 93 153 IPR001356 GO:0003677
Stsc122319g00002 279 ProSiteProfiles 'Homeobox' domain profile. 89 154 IPR001356 GO:0003677
Stsc122319g00002 279 FunFam WUSCHEL-related homeobox 11 93 160 - -
Stsc122319g00002 279 CDD homeodomain 93 155 IPR001356 GO:0003677
Stsc122319g00002 279 Coils Coil 2 22 - -
Stsc122319g00002 279 MobiDBLite consensus disorder prediction 155 171 - -
Stsc122319g00002 279 SUPERFAMILY Homeodomain-like 91 157 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122319g00002 Stsc-Chr122319 11670 14370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122319g00002 5 279 Wox Gene Family AT4G35550 50.174 4.82e-85 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Stsc122319g00002 Homeodomain 4.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122319g00002 - - gmx:100784355 362.844