Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122312g00001 ATGCCTTGTTTACTTCTTCCACACAGCACCTTCGGATCTCAGATTTCTTCCTTAGATTTCTTCTTCTCAATTATTCTCTTTTCTTCTCTACTCTCGCGCTTCTTCCTTTTTGTTCGCTTTCGGTGGTTTCGTTTCGCTGATCTCAAATCTCATACCATGAGGAAGAAACTAGACACCCGTTTTCCTGCTGCTCGGATAAAAAAGATAATGCAAACAGATGAAGATGTTGGAAAGATAGCACTAGCAGTCCCTGTTTTAGTGTCTAAAGCTTTAGAGTTATTTTTGCAAGATCTCTGTAATCGCACTTATGGAATAACCCTTCAAAGAGGAGCAAAGACCATGACTTCACTGCATTTAAAACATTGTGTACAAAGCTATAATGTCTTTGACTTCTTGAGAGACATTGCTAGCAAGGTTCCTGACTATGGCCATGGCCATAGTCACGGTCATTCTGAAGGTGGTTCAGATGATCGTACCCTTCCAAAGAGAAGGAAAGCTGCTGGTGATGATTGTAATGACAGTGATGAAGAGGCTAAGAGGAGTAAGATGTATGAGTTAGGCCACACCGGTGGCACTGGTAGGGGAAGAGGCCGAGGCAGAGGACGAGGTCGTGGTAGAGGGGCTCGAACTGTTGAAAGAGAGGCTCATCATAATCCGCAGGTTGAATCTGAGCCTTGCTCCTCAGTTCAGCACCCTAGCAAAGACATCCCGAATACTGGCATGTCACTGGACAATTCTCCTGAATCCAAGGAGCTTCCGAAAGAGAACACAGCATTTCATGAGGAAAATAATCAATCTCTGCGAAACATTGATCTGAATGCAAACTTAAATGAGATCGAGGAGAAGAATACATGCTCAGCAGCACCGGCCTCTTTGCCACCAGCCACTTTGCCGCCGCCCAGTTTGCCCGAACCGACAACAGAGATCAAACACGAGGAAATCCCTGGCTGGTCCCTTTCTGATGCAGACAAGATGGCCATTGACACTATGCAGCTTGCAAATCTTGGTGGTCAGATAGAAGAAGATGAGGATTATGATGAGGAAGGGTGA 1050 0.4524 MPCLLLPHSTFGSQISSLDFFFSIILFSSLLSRFFLFVRFRWFRFADLKSHTMRKKLDTRFPAARIKKIMQTDEDVGKIALAVPVLVSKALELFLQDLCNRTYGITLQRGAKTMTSLHLKHCVQSYNVFDFLRDIASKVPDYGHGHSHGHSEGGSDDRTLPKRRKAAGDDCNDSDEEAKRSKMYELGHTGGTGRGRGRGRGRGRGRGARTVEREAHHNPQVESEPCSSVQHPSKDIPNTGMSLDNSPESKELPKENTAFHEENNQSLRNIDLNANLNEIEEKNTCSAAPASLPPATLPPPSLPEPTTEIKHEEIPGWSLSDADKMAIDTMQLANLGGQIEEDEDYDEEG 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122312g00001 349 FunFam dr1-associated corepressor homolog 53 138 - -
Stsc122312g00001 349 SUPERFAMILY Histone-fold 46 138 IPR009072 GO:0046982
Stsc122312g00001 349 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 60 123 IPR003958 -
Stsc122312g00001 349 Gene3D Histone, subunit A 46 138 IPR009072 GO:0046982
Stsc122312g00001 349 MobiDBLite consensus disorder prediction 281 319 - -
Stsc122312g00001 349 MobiDBLite consensus disorder prediction 143 252 - -
Stsc122312g00001 349 MobiDBLite consensus disorder prediction 205 220 - -
Stsc122312g00001 349 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 55 172 - -
Stsc122312g00001 349 MobiDBLite consensus disorder prediction 143 184 - -
Stsc122312g00001 349 MobiDBLite consensus disorder prediction 221 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122312g00001 Stsc-Chr122312 6891 13262 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122312g00001 53 339 CCAAT-HAP5 Transcription Factor Family AT3G12480 48.993 2.62e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Stsc122312g00001 CBFD_NFYB_HMF 5.3e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122312g00001 K21752 - gmx:100810093 407.142