Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122307g00003 ATGGCTGTGAAGACTGAGGATTATGCTGCTGTTTCTTTTGGATCCTCAAACGGTTATTATAATCATAATAATCCGTTGTTATTGTCGTCATCGAGTGCGTTTGATTTCTGCCAAGTGGAGAAAAGCGAGTTAGGGTTTATGGAGTTGCTGGGAGTGAAGGACTATTATACTAGTGGTGGTGCTGCTCTGCTTGATTTCCCACACTTTTCTCCAAAAGCTACGGTTCTTCCTTCTTCCCCGGTGGTTAAGGCTTCTTGTGACGGTGATAGTGGTAAAGAATGCTCTGAAGTGTTGAACCACCAGCATCATCAGCAACCTGCAACTCCAAATTCTTCTTCGATTTCGTCGGCGTCCAGCGAAGCTCTCAACGATGAACACAATAAAACTGTAGAACAAGGAGTTGATGACGACGACGACGAAGAACATGACGAGGAACAACAGCAGAAAAAGACTAAGAAACAGTTGAAGGTGAAGAAGACAAAGCAGAAGAGACAGAGAGAGGCGAGATTCGCGTTCATGACGAAAAGCGAGGTTGATCATCTGGAAGATGGTTATAGATGGAGAAAGTACGGTCAAAAGGCCGTGAAAAACAGCCCCTTTCCAAGGAGCTATTATCGTTGCACGAGTGCTTCATGTAATGTAAAGAAGCGTGTGGAGAGGTCATTTACTGATCCAAGCGTGGTGGTGACTACCTATGAAGGCCAACACTCACATCCAAGCCCAGTTATGCCTCGTTCAGCCATTGCCGGATCTCTGATGATGCAGCCACTGAGTGTCTCCACCACCAACTTAGATTGTTCTCTCATGCCTGGAAACTACTTGTATCATCAACAACAACAACGGCCAGTGAACCCATTGACCTCCTTGGGCTTCGCTTACAACAACACCAACAATATTAATAGTGCTTCTTTTTCTCAAGACAATGGTCTTCTTCAAGATATTCTTCCTTCGCACATGTTGAAGGAGCACTAG 972 0.4496 MAVKTEDYAAVSFGSSNGYYNHNNPLLLSSSSAFDFCQVEKSELGFMELLGVKDYYTSGGAALLDFPHFSPKATVLPSSPVVKASCDGDSGKECSEVLNHQHHQQPATPNSSSISSASSEALNDEHNKTVEQGVDDDDDEEHDEEQQQKKTKKQLKVKKTKQKRQREARFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERSFTDPSVVVTTYEGQHSHPSPVMPRSAIAGSLMMQPLSVSTTNLDCSLMPGNYLYHQQQQRPVNPLTSLGFAYNNTNNINSASFSQDNGLLQDILPSHMLKEH 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122307g00003 323 MobiDBLite consensus disorder prediction 100 123 - -
Stsc122307g00003 323 SUPERFAMILY WRKY DNA-binding domain 173 241 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc122307g00003 323 Gene3D WRKY domain 164 242 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc122307g00003 323 FunFam WRKY transcription factor 57 167 241 - -
Stsc122307g00003 323 PIRSF WRKY_txn_fact_IIc 1 323 IPR017396 GO:0003700
Stsc122307g00003 323 SMART WRKY_cls 181 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc122307g00003 323 Pfam WRKY DNA -binding domain 182 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc122307g00003 323 ProSiteProfiles WRKY domain profile. 176 241 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc122307g00003 323 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 88 278 IPR044810 GO:0003700
Stsc122307g00003 323 MobiDBLite consensus disorder prediction 98 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122307g00003 Stsc-Chr122307 7514 9950 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122307g00003 29 322 WRKY Transcription Factor Family AT2G47260 47.761 3.85e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc122307g00003 WRKY 3.5e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122307g00003 - - gmx:100784158 311.997