Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122302g00002 ATGTCCAAACCACCCTCTGCCTTCGATGCTCTCCTGTCCGGCGCCAAGAAGGAGAAATTGGAACTATCGAAGCAACCAACCGCATCTTCTCGCAACAAACGAAAAGCCGCATCCTCCACTCTCCCCACTCCAACCTCCACACTAAACCCTAACGATCCCAAACCCTCCGAAACCGTTCCTAAGCCGCCGACTGACCCGCCCAAGCAAGAACCGGAGAAAGAAGGCCCTCCTCCAACCAAGGCTCGCTGCGTGACTTCTTCTTCGCCTTTCTTGAAGGAGCGCGTTCCGCAGCTGAAGGCGAGGCCTGAGAATTTCGAACCCAGCTCAGTGGTATCGTGGGAGAAGGGCACCCCTCTGCCGTTCTCGTTACTGGCGTTGGCGCTTGACATGATTTCTGAGAAGTCTGCGAGAATTGCGACTACAAATATTGCGTGCAATTTGATGCAAACTGTGATATACTCTACCCCTCAGGATCTTCTGCCTCTGATGTATCTCTTGGGGATGAAGGTTGCTCCGGCGCATGAAGGCGTGGAAATGGGAATTGGTGAGTCTTCGATTGTTAAGGCACTTGCTGAGGCAACTGGAAGAACTAAATCCACAATCAACAAGCTGTATGAGAAACTGGGTGATTTGGGATTAGTTGCCAAGCAATGCCGTCCATGTCAGCCTATTTTTGGCTGGCAGCGTGAGCCTCTGACTATTAGGAAGGTTTTCAACACCTTCCGTCTTATTGCCAAGGAATCTGGAACAGACAGTCAAGAGCAGAAAAAGAATCATGTAAAGGGACTTGTTCTTGCTGCAACTGACTGTGAACCTCGATATCTTATTGGTCTTCTGCAGGGAAAGTTGCGGATTGGTATGGCTGATCAAACTCTGTTGGCTGCATTAGCCCAATCAGCAGTATATACTGAAGAACATTCTAAACCACCTGCTGATATTAAGTCTCCTGTCGAAGAGGCTGTAAAAATTGTCAAACAAGCCTATTCTGTTGTTCCTGTTTACGACAAAATCATATCTGTGCTGCTTACACATGGTGTATGGAAACTTCCATCAACATGTAATTTCACTCCTGGTATTCCAGTTGGACCTATGCTGTCAAAAGCAACGAAGGGTTTCTCTGAGATTCTAAGTACAGTAAAGGATGTGGAGTTTACTTGCGAATACAAGTATGATGGACAGCGTGCCCAGATACATTACATGGAAAATGGTTCAGTTGAGATTTATAGTAGAAATGCCGAGCGGAATACTGGAAAGTATCCTGATGTTGTCGCTGCAATTTCAAGGGTGAAGAAATCAACTGTATCATCATTTGTCCTTGATTGTGAAATTGTGGATATGATCGTGAAAACCAGAGCATCCGTTCTTTCCAGGAACTTAGTGGATAACCTGAAAATCCGTAGAGAGCATCTTTATGCCTCTTTTGAAGAAGAAACTGGAGTTTTTCAGTATGCAACGGCAATAGCATCAAACAACGTCGAGGAAATACAGGAATTTCTCGACCAAGCTGTTGCTTCAAGCTGTGAGGGATTAATCATTAAAACATTAGATGAAGATTCTACATATGAACCTTTATCAAAAAATTGGCTAAAACTGAAGAAAGATTATCTGAACAACATAGGGGACTCACTAGATTTGGTACCTATAGCTGCATTCCACGGACGTGGGAAACGTACAGGAGCGTATGGTGCTTTTCTTCTTGCTTTCTATGACTGCAATAATGAAGAATTTCAAAGTATTTGTAAGATAGGAACGGGATTTACTGAAAAAGAACTCAAACAGTGTTCTACTAGTCTTCTTTCTAAAGAGATTCCCAGGCCAAAGTCATACTATCGGTATGGAAATAAAATGAAGCCTGATGTCTGGTTTGAAGCTAGTGAGCTGAAATATCTCATAGTATGGGGCCAGATGGGGTTGGAACTTTATGTCCTTCCGGTTTCATGGATGTCCTTGGAGGTGTGGGAGGTGAAAGCTTCAGATCTGACCATTAGCCCAGTTCACCGTGCGGCAGTGGGCATAGTAGATTCAGATAAGGGCATATCTCTTAGATTCCTCGGCTAG 2058 0.447 MSKPPSAFDALLSGAKKEKLELSKQPTASSRNKRKAASSTLPTPTSTLNPNDPKPSETVPKPPTDPPKQEPEKEGPPPTKARCVTSSSPFLKERVPQLKARPENFEPSSVVSWEKGTPLPFSLLALALDMISEKSARIATTNIACNLMQTVIYSTPQDLLPLMYLLGMKVAPAHEGVEMGIGESSIVKALAEATGRTKSTINKLYEKLGDLGLVAKQCRPCQPIFGWQREPLTIRKVFNTFRLIAKESGTDSQEQKKNHVKGLVLAATDCEPRYLIGLLQGKLRIGMADQTLLAALAQSAVYTEEHSKPPADIKSPVEEAVKIVKQAYSVVPVYDKIISVLLTHGVWKLPSTCNFTPGIPVGPMLSKATKGFSEILSTVKDVEFTCEYKYDGQRAQIHYMENGSVEIYSRNAERNTGKYPDVVAAISRVKKSTVSSFVLDCEIVDMIVKTRASVLSRNLVDNLKIRREHLYASFEEETGVFQYATAIASNNVEEIQEFLDQAVASSCEGLIIKTLDEDSTYEPLSKNWLKLKKDYLNNIGDSLDLVPIAAFHGRGKRTGAYGAFLLAFYDCNNEEFQSICKIGTGFTEKELKQCSTSLLSKEIPRPKSYYRYGNKMKPDVWFEASELKYLIVWGQMGLELYVLPVSWMSLEVWEVKASDLTISPVHRAAVGIVDSDKGISLRFLG 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122302g00002 685 CDD Adenylation_DNA_ligase_I_Euk 352 535 - -
Stsc122302g00002 685 MobiDBLite consensus disorder prediction 1 101 - -
Stsc122302g00002 685 Pfam ATP dependent DNA ligase C terminal region 557 683 IPR012309 GO:0003910|GO:0006281|GO:0006310
Stsc122302g00002 685 CDD OBF_DNA_ligase_I 540 683 - -
Stsc122302g00002 685 Pfam ATP dependent DNA ligase domain 462 532 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Stsc122302g00002 685 Pfam ATP dependent DNA ligase domain 363 454 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Stsc122302g00002 685 ProSitePatterns ATP-dependent DNA ligase signature 2. 508 532 IPR016059 GO:0003909
Stsc122302g00002 685 Gene3D - 464 537 - -
Stsc122302g00002 685 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 33 447 - -
Stsc122302g00002 685 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 387 395 IPR016059 GO:0003909
Stsc122302g00002 685 Gene3D DNA ligase/mRNA capping enzyme 363 460 - -
Stsc122302g00002 685 Pfam DNA ligase N terminus 120 297 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Stsc122302g00002 685 Gene3D - 97 362 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Stsc122302g00002 685 Gene3D - 538 683 IPR012340 -
Stsc122302g00002 685 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 324 533 - -
Stsc122302g00002 685 SUPERFAMILY Nucleic acid-binding proteins 540 683 IPR012340 -
Stsc122302g00002 685 MobiDBLite consensus disorder prediction 25 54 - -
Stsc122302g00002 685 ProSiteProfiles ATP-dependent DNA ligase family profile. 427 570 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Stsc122302g00002 685 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 102 353 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Stsc122302g00002 685 FunFam DNA ligase 97 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122302g00002 Stsc-Chr122302 5829 11179 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122302g00002 2 683 Core DNA Replication Machinery Family AT1G08130 53.581 0.0 746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122302g00002 K10747 - gmx:100783155 822.387