Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122299g00002 ATGTATATATACAACTCTATTCACTATCAACTCTCTTATCTTATTTCCACAAACTCCTCTTTTTCATATATGGCTTCTATTATCTTTCTCTTCTTTGCTATTACCATAACACTCGCCGCCGCTCTCCTCCTCCGCCGGACACACCGCCACCGCAACCTCCGCCTCCCTCCGGGCAGCCTAGGCCTCCCCTTTGTCGGCGAAACCTTACAGCTAATCTCCGCCTACAAGAGCGACAATCCTGAACCGTTCATAGACCGGAGAGTGAACCGGTACGGTCCGATCTTCACGACGCACGTGTTCGGAGAACCGACGGTTTTTTCGGCTGACCCGGAAACGAACCGGTTTTTTCTTCTGAACGAAGGGAAGCTGTTCGATTGCAGCTACCCCGGTTCGATATCGAATCTTCTGGGGAAACACTCGTTGCTTTTGATGAAAGGGTCGCTTCATAAGAGAATGCATTCACTCACTGCAAGCTTCGCTAACTCCTCCATTATCAAGGATCATCTTCTTCTTGATATTGACCGACTTATTCGCCTCAACTTGGATTCTTGGTCCCACCGGGTTCTTCTCATGGAGGAGGCTAAAAAGATAACATTTGAGTTGACAGTGAAGCAGCTTATGAGCTTTGATCCTGGTGAATGGACTGAAAATCTAAGGAAAGAGTATGTCCTTGTCATTGAAGGATTCTTCACTCTCCCTTTTCCTCTCTTCTCTACCACTTACCGCAGAGCCATCAAGGCAAGAAGGAAGGTGGCGGAGGCACTAACGTTGATAGTGAGGGAGAGGAGAAAAGAAAGTGAAACGGAGGAGGGGAAAAAGAATGATATGCTAGGAGCACTGTTGGGATCCGGCAACCGGTTCTCCGACGAGCAAATAGTGGATTTCATGGTGGCGTTGCTCGTCGCCGGCTATGAAACCACCTCCACCATAATGACTCTTGCTGTCAAGTTCCTCACGGAGACTCCTCTAGCGTTAGCACAACTCAAGGAAGAACATGATGAAATTCGGTCAAAGAAGTGTAACTCGGAGGCACCATTGGAGTGGTCAGATTATAAGTCCATGGCATTTACTCAATGTGTTGTGAACGAGACTTTGCGGGTGGGGAACATAATTGGTGGGATATTTAGGAGAGCAATGACAGACATCAACATTAAAGGTTACACTATTCCTAAGGGATGGAAGGTCTTCGCATCATTTCGTGCTGTGCATCTAAATCCAGATCATTTCGAAGATGCTCGCACCTTCAATCCGTGGAGATGGCAGAGTAACACTGAATTTACATGCCCTACAAATGTATATACTCCGTTCGGTGGAGGGCCACGGCGGTGCCCTGGCTACGAGCTCGCGAGAGTGCTGCTATCCGTCTTCCTTCATCGCATGGTAACCCAATACAGTTGGTACCCTGCAGAGGAAGATAAGTTGGTGTTTTTCCCAACAACTAGGACACAAAAGAGGTACCCTATCATAGTGAAGCGTAGAGAGGATTACAACAAACTATGTAAAGCACAATGA 1512 0.4735 MYIYNSIHYQLSYLISTNSSFSYMASIIFLFFAITITLAAALLLRRTHRHRNLRLPPGSLGLPFVGETLQLISAYKSDNPEPFIDRRVNRYGPIFTTHVFGEPTVFSADPETNRFFLLNEGKLFDCSYPGSISNLLGKHSLLLMKGSLHKRMHSLTASFANSSIIKDHLLLDIDRLIRLNLDSWSHRVLLMEEAKKITFELTVKQLMSFDPGEWTENLRKEYVLVIEGFFTLPFPLFSTTYRRAIKARRKVAEALTLIVRERRKESETEEGKKNDMLGALLGSGNRFSDEQIVDFMVALLVAGYETTSTIMTLAVKFLTETPLALAQLKEEHDEIRSKKCNSEAPLEWSDYKSMAFTQCVVNETLRVGNIIGGIFRRAMTDINIKGYTIPKGWKVFASFRAVHLNPDHFEDARTFNPWRWQSNTEFTCPTNVYTPFGGGPRRCPGYELARVLLSVFLHRMVTQYSWYPAEEDKLVFFPTTRTQKRYPIIVKRREDYNKLCKAQ 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122299g00002 503 Pfam Cytochrome P450 232 474 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc122299g00002 503 PRINTS E-class P450 group I signature 358 376 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc122299g00002 503 PRINTS E-class P450 group I signature 88 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc122299g00002 503 PRINTS E-class P450 group I signature 291 308 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc122299g00002 503 PRINTS E-class P450 group I signature 433 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc122299g00002 503 PRINTS E-class P450 group I signature 443 466 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc122299g00002 503 PRINTS E-class P450 group I signature 311 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc122299g00002 503 PRINTS E-class P450 group I signature 398 422 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc122299g00002 503 FunFam Cytochrome P450 90A1 45 493 - -
Stsc122299g00002 503 SUPERFAMILY Cytochrome P450 48 493 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc122299g00002 503 CDD CYP90-like 87 492 - -
Stsc122299g00002 503 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 436 445 IPR017972 GO:0005506|GO:0016705
Stsc122299g00002 503 Gene3D Cytochrome P450 44 493 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc122299g00002 503 PANTHER CYTOCHROME P450 26 52 467 - -
Stsc122299g00002 503 PRINTS P450 superfamily signature 359 370 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc122299g00002 503 PRINTS P450 superfamily signature 443 454 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc122299g00002 503 PRINTS P450 superfamily signature 302 319 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc122299g00002 503 PRINTS P450 superfamily signature 434 443 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122299g00002 Stsc-Chr122299 4954 9042 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122299g00002 144 494 Cytochrome P450 AT5G05690 81.197 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122299g00002 K09588 - gmx:100781291 796.578