Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122293g00004 ATGGCTTTTCCAGGAGCAGCAAATGAATCCATGTCAGGAGCAAGTTCACCACAGAGGAAGATGGGAAGGGGTAAGATTGAGATCAAGAGGATTGAGAACACCACAAATCGGCAAGTTACCTTTTGCAAGCGCAGAAATGGCCTTCTCAAGAAAGCTTATGAGTTATCTGTTCTTTGTGATGCTGAGGTTGCTCTTATTGTTTTCTCCAGCCGTGGCCGTCTCTATGAATATGCTAATAACAGTGTCAAAGCAACTATTGATAGGTATAAGAAAGCATGTTCAGATTCATCTGGTGCTGGATCTGCTTCTGAGATTGATGCTCAGTATTACCAGCAAGAAGCAGACAAACTGCGTGCCCAAATTAGTAACCTGCAGAATAACAATAGGCAAATTCTGGGTGAGTCGTTGAGTAGTATGGGTGTGAAGGAGCTCAAAACCCTGGAGAGTAAATTAGAGAAAGGAATAAGCAAGATTCGTTCCAAAAAGAATGAGCTGCTGTTTGCTGAAATTGAATACATGCAAAAGAGGGAGATAGACTTGCACAACAACAATCAGCTTCTTCGAGCTAAGATAGCAGAAAGTGAGAGGAACCACCATAACATGAGTGTGTTGCCAACAACTGGAACCACAAACTATGATTCTATGCAGCCTCCTCATGATCATCATCATCATCAGCAGCAGCAGCAGGAGCAATTTGACTCTCGTGGCTACTTCCAAGTCACTGGCCTACAACCCAATAATCAGTATGCACGCCAAGACCAAATGTCCCTTCAATTAGTTTGA 783 0.4304 MAFPGAANESMSGASSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKACSDSSGAGSASEIDAQYYQQEADKLRAQISNLQNNNRQILGESLSSMGVKELKTLESKLEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERNHHNMSVLPTTGTTNYDSMQPPHDHHHHQQQQQEQFDSRGYFQVTGLQPNNQYARQDQMSLQLV 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122293g00004 260 CDD MADS_MEF2_like 22 91 IPR033896 GO:0000977|GO:0045944
Stsc122293g00004 260 SMART madsneu2 21 80 IPR002100 GO:0003677|GO:0046983
Stsc122293g00004 260 Gene3D - 33 99 IPR036879 GO:0003677|GO:0046983
Stsc122293g00004 260 PRINTS MADS domain signature 23 43 IPR002100 GO:0003677|GO:0046983
Stsc122293g00004 260 PRINTS MADS domain signature 58 79 IPR002100 GO:0003677|GO:0046983
Stsc122293g00004 260 PRINTS MADS domain signature 43 58 IPR002100 GO:0003677|GO:0046983
Stsc122293g00004 260 FunFam agamous-like MADS-box protein AGL11 33 116 - -
Stsc122293g00004 260 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 30 77 IPR002100 GO:0003677|GO:0046983
Stsc122293g00004 260 Pfam K-box region 106 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc122293g00004 260 ProSitePatterns MADS-box domain signature. 23 77 IPR002100 GO:0003677|GO:0046983
Stsc122293g00004 260 Coils Coil 144 164 - -
Stsc122293g00004 260 Coils Coil 107 134 - -
Stsc122293g00004 260 SUPERFAMILY SRF-like 22 93 IPR036879 GO:0003677|GO:0046983
Stsc122293g00004 260 PANTHER SERUM RESPONSE FACTOR HOMOLOG 21 222 - -
Stsc122293g00004 260 MobiDBLite consensus disorder prediction 197 232 - -
Stsc122293g00004 260 ProSiteProfiles MADS-box domain profile. 21 81 IPR002100 GO:0003677|GO:0046983
Stsc122293g00004 260 MobiDBLite consensus disorder prediction 199 215 - -
Stsc122293g00004 260 MobiDBLite consensus disorder prediction 1 25 - -
Stsc122293g00004 260 ProSiteProfiles K-box domain profile. 107 197 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122293g00004 Stsc-Chr122293 9120 14544 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122293g00004 1 260 MADS-box Gene Family AT3G58780 61.364 4.11e-107 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc122293g00004 K-box 5.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122293g00004 K09264 - gmx:732595 393.66