Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122290g00001 ATGAAGAGATCAATAGCATTCTCTAGAACCCTAAATCTAATGAGAATTAGAGAACGCTTTCATTTTCAACAACATCATCATCACCTCATAATTGGTACTCAGAATAACAATCGTAAGCATCTCCATCACGTGATATTAGAAAGAAGAAGACGTGAAAACGAAAATCAGTGTTTCCGGGAACTCAGGGCACTACTTCCTCCGGGAACTAAGAAACACAAAGCTTCGGTTCTTGTAGCGGCAAAGGAGGCATTGAAATCTTTGGTTGCTGAAATTGAAAAGCTTAACATAAGAAATCAAGAATTGGAAACACTATTAGTTGGCTCATCATCATCAAGTTATGTAAATGTGAGTAACTTCTCTTCCTCATCATCATCGTCGTTGAACGTTGCCGTGTTGCATGTGCCGGGATCGTCGAGCTCATCGGAAGAGAGAATGGTGGATTTGCAAGTCGCCGTCGTCAGAGGAGAAAGCTCGTCTCATGATCATGATGAATCTGATATAGTGATTCGGTTGTTGGAATTCTTGAAAAGCCTTCACAACCAGCTGAGCTTCGTTTCCATGGCCACAAACTCTACTATTAACACTACACAAGGGACAACACTTAATCAAATCAACTTCAGAATAAGGATTCATGTAAGTGAATGGGACGAGCCTGGCTTCGTGGAAGCAGTCACAAGAATTGTGGCTGACTTACTGCCTTATTGA 705 0.4128 MKRSIAFSRTLNLMRIRERFHFQQHHHHLIIGTQNNNRKHLHHVILERRRRENENQCFRELRALLPPGTKKHKASVLVAAKEALKSLVAEIEKLNIRNQELETLLVGSSSSSYVNVSNFSSSSSSSLNVAVLHVPGSSSSSEERMVDLQVAVVRGESSSHDHDESDIVIRLLEFLKSLHNQLSFVSMATNSTINTTQGTTLNQINFRIRIHVSEWDEPGFVEAVTRIVADLLPY 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122290g00001 234 CDD bHLH_AtbHLH_like 43 94 IPR045239 -
Stsc122290g00001 234 Gene3D - 34 108 IPR036638 GO:0046983
Stsc122290g00001 234 SMART finulus 44 93 IPR011598 GO:0046983
Stsc122290g00001 234 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 230 IPR044658 -
Stsc122290g00001 234 Coils Coil 77 104 - -
Stsc122290g00001 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 35 103 IPR036638 GO:0046983
Stsc122290g00001 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 38 87 IPR011598 GO:0046983
Stsc122290g00001 234 Pfam Helix-loop-helix DNA-binding domain 41 87 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122290g00001 Stsc-Chr122290 27 1658 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122290g00001 1 231 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 40.909 9.81e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc122290g00001 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122290g00001 - - ahf:112776694 268.47