Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122249g00003 ATGTGGCTCCCAAGTACAAAGGCATCGGTAATTAGAAAGGGTGGAGGGGGACATGGATTGGTGGCAGTTGCAATAGACAAGGATAGCAAAGGCAGTCGCTATGCTCTCAAATGGGCTGCCGATAGCCTTCTTGCCCGAGGCCAAACTGTCGTTCTTATCCACGTTTTGCACAAGACGTGTTCCCCTCTTTCTATTGGAGGTAGCCATGCCATAATATGCAACAGTCATACTCCATCTATATCTCCTCAAAGAGACCATCTCATCAACATTACTAAGGATCTTTTCCGTACCTTTCACTGCTATTGCACGCGTAAAGATATACAATGCCTTGATGTGCTAGTTGAAGACACTGACGTTGTGAAAGGAATAACAGAGTATGTGTCTTACGCGGCAATTGAGAACCTAGTGCTTGGTGCAGCGTCAAGGCATGGTTTTATAAGATTCAAGTCATCAAGTACACCAAGCAACGTATCAAAAGGGGCGCCTGATTTCTGCACAGTGTATATAATATCAAAAGGGAAGATATCTTCAGTTAGGAGTGCTTCACGTTCGGCAGCACATGCGTCTCCTCTCCTCAGCCATATACAGGCCCTGAATAATGACAACGACAGTGCAAGTGAAACAAGCAGTCAGTTATCGTCAAGGCGTATGAGCTTCAAAGATCATAGAAGATCCATGAAACCTCACAGCTGGCAGGACGAATCCTTAAGGTCATCATCGTCACAAATTGGAAAAACAATGGGAACGGGGTTGAGTGGAAGGTCGTCATGCATGGAGTTAGCCCCAGACTCCGATACAGACATATCATTTGTGAGCTCCGGGAGGCCAAGTACCAGTGGCCGTTCCTCCTCTGTCTTGTATGACTGCATGGACTCTTGCTCTGCTCGTAATTCACGGGTTTCAACCAGTTCCGATCGTAGCTTGGGATCAATCCGATGTAGCCTCGCTTTCCCAACTTCCCCCGACCCCGATATTTCTCTTTCTTTCTCTCAGGAAAGCATTGGAACCTCTTCCTTTTCTTATTCCTCTCAGAACATGGACGATGTAGAATCTGACATGAAGAGGCTCAAGCTTGAATTAAAACAAACCATGGAAATGTATAGTACAGCGTGCCGAGAAGCACTCACTGCACAACACAAGCTAGTGGAACTTAACTCCTGGAGGATTGAAGAGGAAAAGAAATTAGATGAGGCACGATTGGCCCAAGAAGTAGCATTGGCAATCGCAGAGAAAGAGAAAGCAAGGAGCAAAGCAGCCCTGGAAACTGCAGAGGCAGCCAGAAGAATCGCCGAGGCTGAAGCAAACAGAAGAGTAAATGCCGAAATGAAAGCTCTTAAAGAAGCAGAGGAAATGAGGAAACTATTGGATAATCTAGCTCAAACCGATGAAAGATATAGGAAATACACAATCCAAGAGATTGAAGCAGCTACAGAGTCCTTTTCTGAATCTCGAAAAATCGGGGAAGGTGGTTATGGCCCTGTCTATAAATGTTACCTTGACCACACTCCTGTGGCTGTCAAGGTTCTACGACAAGATTCTGCTCAGGGGAAATCGCAGTTTCAGCAAGAGATTGACATACTGAGCTGCATACGGCATCCGAATATGGTTCTTCTTGTTGGAGCATGCCCAGAGCACGGCATGCTGATCTATGAATACATGGCCAATGGGAGCTTAGAAGATTGCATGTTTCAGAAGAAGGGCATTGTTCTGTCTTGGCAACTGAGATTTCGGATTGCGGCAGATGTAGCCACTGGCTTACTATTCCTCCACCAGACCAAGCCAGAACCACTGGTACACCGTGATCTAAAGCCAGCAAACATTTTGTTAGACCACAACTTCGTAAGCAAGATCAGCGACGTTGGGTTGGCGAGGCTTCTCCCCGCCGTGGCCGAAAATGTGACGCAGTGCTGCATGACGTCAGCAGCGGGAACATTTTGCTACATTGATCCGGAGTATCAGCAGACTGGAATGCTTGGAGTGAAGTCGGACGTGTACTCTTTAGGGATCATTCTTCTTCAGTTATTGACAGGAAGGGCTCCAATGGGGCTGGCTCACCAAGTTGAGCGCTCCATTGAGAAGGAGGCACTGGCTGAGATGCTTGACCCCTCTGTCACTGACTGGCCTCTTGAAGAAGCTTTATGCCTTGCCAAGCTCGCACTCACTTGTGCAGAGCTCAGACGAAAAGATAGGCCAGACCTTGCTCAACATGTACTGCCGGAACTCAAAAAACTTAGAGACTTTGCGGAAGGCAATTCCAGCCCAACTTTCTCTTGTAGTAACCTTAGTTATGCAACATCTCCCTATGTCAGTCAAGCTTCTACACAGCAGGATGTAATGAGCGAACCACCCTTTGAACATTCCCAAAGTTCAACAAGTCCCTCAAGTCCTTTATCACCAACACAAGAAAATCAAGGGGCCAAGTCTGAGTCTGAGTAA 2436 0.4684 MWLPSTKASVIRKGGGGHGLVAVAIDKDSKGSRYALKWAADSLLARGQTVVLIHVLHKTCSPLSIGGSHAIICNSHTPSISPQRDHLINITKDLFRTFHCYCTRKDIQCLDVLVEDTDVVKGITEYVSYAAIENLVLGAASRHGFIRFKSSSTPSNVSKGAPDFCTVYIISKGKISSVRSASRSAAHASPLLSHIQALNNDNDSASETSSQLSSRRMSFKDHRRSMKPHSWQDESLRSSSSQIGKTMGTGLSGRSSCMELAPDSDTDISFVSSGRPSTSGRSSSVLYDCMDSCSARNSRVSTSSDRSLGSIRCSLAFPTSPDPDISLSFSQESIGTSSFSYSSQNMDDVESDMKRLKLELKQTMEMYSTACREALTAQHKLVELNSWRIEEEKKLDEARLAQEVALAIAEKEKARSKAALETAEAARRIAEAEANRRVNAEMKALKEAEEMRKLLDNLAQTDERYRKYTIQEIEAATESFSESRKIGEGGYGPVYKCYLDHTPVAVKVLRQDSAQGKSQFQQEIDILSCIRHPNMVLLVGACPEHGMLIYEYMANGSLEDCMFQKKGIVLSWQLRFRIAADVATGLLFLHQTKPEPLVHRDLKPANILLDHNFVSKISDVGLARLLPAVAENVTQCCMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIILLQLLTGRAPMGLAHQVERSIEKEALAEMLDPSVTDWPLEEALCLAKLALTCAELRRKDRPDLAQHVLPELKKLRDFAEGNSSPTFSCSNLSYATSPYVSQASTQQDVMSEPPFEHSQSSTSPSSPLSPTQENQGAKSESE 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122249g00003 811 CDD STK_N 20 173 - -
Stsc122249g00003 811 Pfam Universal stress protein family 22 162 IPR006016 -
Stsc122249g00003 811 Coils Coil 346 366 - -
Stsc122249g00003 811 Gene3D Transferase(Phosphotransferase) domain 1 553 757 - -
Stsc122249g00003 811 PANTHER OS02G0152300 PROTEIN 21 799 - -
Stsc122249g00003 811 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 452 552 - -
Stsc122249g00003 811 ProSitePatterns Serine/Threonine protein kinases active-site signature. 597 609 IPR008271 GO:0004672|GO:0006468
Stsc122249g00003 811 Coils Coil 406 471 - -
Stsc122249g00003 811 MobiDBLite consensus disorder prediction 769 811 - -
Stsc122249g00003 811 SMART serkin_6 480 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc122249g00003 811 SUPERFAMILY Protein kinase-like (PK-like) 464 735 IPR011009 -
Stsc122249g00003 811 MobiDBLite consensus disorder prediction 199 252 - -
Stsc122249g00003 811 MobiDBLite consensus disorder prediction 216 231 - -
Stsc122249g00003 811 MobiDBLite consensus disorder prediction 232 252 - -
Stsc122249g00003 811 Gene3D HUPs 12 170 IPR014729 -
Stsc122249g00003 811 Pfam Protein kinase domain 481 732 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc122249g00003 811 Gene3D Phosphorylase Kinase; domain 1 451 552 - -
Stsc122249g00003 811 MobiDBLite consensus disorder prediction 199 215 - -
Stsc122249g00003 811 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 22 170 - -
Stsc122249g00003 811 ProSiteProfiles Protein kinase domain profile. 480 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122249g00003 Stsc-Chr122249 10217 13401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122249g00003 1 789 Receptor kinase-like Gene Family AT1G78940 55.293 0.0 790
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Stsc122249g00003 Pkinase 1.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122249g00003 - - ahf:112740428 1380.93