Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122244g00001 ATGTCTCGAGCATACGATCCCTGCACCGAGAGGTATTCCGACTTGTATTTCAATCATCCAGAAGTTCAGAAGGCACTTCATGCCAACGTAACCGGAATTCCTTATTCATGGAAGACTTGCAGTGATATTGTGGGGAACTATTGGACTGATTCTCCTCTAACTATGCTCCCTATATATCATGAACTTATTAATGCTGGTCTCAAGATATGGGTATACAGTGGAGATACTGATTCAGTGGTTCCAGTCACCGCAACTAGATATTCAATAGATGCATTGAAGCTACCAACACTCATCAACTGGTACCCTTGGTATGATAACGGCAAGGTTGGTGGTTGGAGTCAAGTTTACAAAGGACTGACATTTGTGACGGTAAGAGGAGCTGGACATGAGGTTCCGCTTCATCGGCCGCGCCAAGCCTTCATTCTTTTCATGTCTTTCTTGGAGGACAAGCCAATGCCATCTTCAAGTTAG 471 0.4437 MSRAYDPCTERYSDLYFNHPEVQKALHANVTGIPYSWKTCSDIVGNYWTDSPLTMLPIYHELINAGLKIWVYSGDTDSVVPVTATRYSIDALKLPTLINWYPWYDNGKVGGWSQVYKGLTFVTVRGAGHEVPLHRPRQAFILFMSFLEDKPMPSSS 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122244g00001 156 SUPERFAMILY alpha/beta-Hydrolases 3 153 IPR029058 -
Stsc122244g00001 156 Gene3D - 55 148 - -
Stsc122244g00001 156 Gene3D - 8 44 - -
Stsc122244g00001 156 Pfam Serine carboxypeptidase 3 148 IPR001563 GO:0004185|GO:0006508
Stsc122244g00001 156 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 8 136 IPR001563 GO:0004185|GO:0006508
Stsc122244g00001 156 FunFam Carboxypeptidase 5 152 - -
Stsc122244g00001 156 ProSitePatterns Serine carboxypeptidases, histidine active site. 119 136 IPR033124 GO:0004185
Stsc122244g00001 156 FunFam Carboxypeptidase 55 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122244g00001 Stsc-Chr122244 8195 9758 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122244g00001 18 152 Calmodulin-binding Proteins AT2G22960 27.941 1.89e-15 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122244g00001 K16297 - gmx:100812000 309.686