Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122236g00003 ATGGACTCCGCCCAACTTAACTCCATCACGGAGCTCCGGCAAAGCAGTTCCGGCAACGCCACTGAATTGCAATCGGAGGATCCGAATCGATCTTTTTCACAACCTGATGCCTCAGCCCCGTCCTCCGGCAACGCCGGCGGTGCAAGATACAAGCTGATGTCTCCGGCAAAGCTCCCGATCTCGAGGTCCCCGTGCGTCACGATTCCTCCTGGCCTCAGTCCGACGTCATTTCTCGAATCTCCGGTGCTACTCTCCAACATGAAGGTTGAACCTTCACCTACTACGGGTTCCCTTTCTAAGCTTCACCAAACTGGGCATGGTTCCGTGGCTTCTGCTGCTGTATCTACTACATTTCCTGTAACCACTGTATGCTTCAATACCAATACTGTTGATGACAGAACATCGAGCTTATTTGAGTTCAAAGCACACAATAGATCAAATATGGTTAATGCGGACTTCAACAACCATGTAAATGAAAAATCTACTCAAATTGATGTTCAAGGAAAAGCCCAAAGTATCCCTTTGTCACCTTCAGTTAAAAGTGAGATAGCTGTAACTTCAAATGAGTTAAGTCTATCATCACCTGTTCAAATGGTTAGTTCAGGAGCTAGTTCTCATGTTGAAGTCGATATGGATGAATTTAACCATGGGGGAAGCACAGCCAATGGGCTTCAGGCATCACAAGTTGAGGGTAAGGGCAATGGACTTTCAGTTGCATCTGAGAGAGTATCTGATGACGGATACAACTGGAGAAAATATGGGCAAAAACTTGTTAAAGGAAGTGAATTTCCAAGAAGTTATTACAAATGTACACATCCCAACTGTGAAGTGAAGAAACTATTTGAACGTTCCCATGATGGGCAAATCACTGAGATAATTTACAAGGGAACACATGATCATCCTAAACCTCAACCAAACCGCCGATACTCTGCTGGAAGTATTATGTCAATGCAAGACGAGAGATCTGATAAGGTTTCTTTTGCTGGTCGAGATGAGAAGGCATCCAATATATATGGCCAGATCTCTCATACTGCTGAGCCTGGCAGTACTCCAGAGCTGTCACCCGGAGGAGCAAGTGGTGATAGTCCAGAGGTTGCAGGGGTTACCTCAAATAGGGTTAATGATGAGCTTGACGATGATGATCCTTTCTCCAAGCGAAGAAAAATGGATCTTGGAAGTGCTGATATCACTCCTGTAGTTAAGCCCATCCGGGAGCCACGGGTTGTTGTACAAACTCTGAGCGAGGTTGATATATTGGATGATGGGTACCGTTGGCGTAAGTATGGGCAGAAGGTGGTCAGAGGCAATCCAAATCCTAGGAGTTATTATAAATGCACAAATGCTGGTTGCCCTGTTAGAAAGCATGTCGAGCGAGCATCTCACGATCCAAAAGCAGTAATAACCACATATGAAGGTAAGCACAATCATGATGTACCGACTGCAAAGAATAGTAGCCATGACATGGCAGGACAAGCTGCATCCATTGGACAAGCAAGAATTAGGTCAGAAGAAAGTGATACGATTAGCCTTGATCTAGGGATGGGCATTAACCAAGGTGCTGAAAATGGCTCGAACGGGCAAGGAAGATTGCCACTTTCTGAATTTGGAGGCAGTCAAACTCACACAAGCAATTCCAATTTCAAGTTTGTCCATGCTGCCTCAGCTCCAGTATACTATGGTGTTCTAAATAACGGCTCCATTCCATATGGTTCTAGGGAAAATCTGAGTGATAGTACACCCTTAAACCACTCTACTTATCCCTGCCCACAGAACATGGGAAGAATACTAACGGGTCCCTAG 1800 0.4528 MDSAQLNSITELRQSSSGNATELQSEDPNRSFSQPDASAPSSGNAGGARYKLMSPAKLPISRSPCVTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLSKLHQTGHGSVASAAVSTTFPVTTVCFNTNTVDDRTSSLFEFKAHNRSNMVNADFNNHVNEKSTQIDVQGKAQSIPLSPSVKSEIAVTSNELSLSSPVQMVSSGASSHVEVDMDEFNHGGSTANGLQASQVEGKGNGLSVASERVSDDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPNRRYSAGSIMSMQDERSDKVSFAGRDEKASNIYGQISHTAEPGSTPELSPGGASGDSPEVAGVTSNRVNDELDDDDPFSKRRKMDLGSADITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKNSSHDMAGQAASIGQARIRSEESDTISLDLGMGINQGAENGSNGQGRLPLSEFGGSQTHTSNSNFKFVHAASAPVYYGVLNNGSIPYGSRENLSDSTPLNHSTYPCPQNMGRILTGP 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122236g00003 599 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 80 502 IPR044810 GO:0003700
Stsc122236g00003 599 FunFam WRKY transcription factor 234 304 - -
Stsc122236g00003 599 Pfam WRKY DNA -binding domain 245 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc122236g00003 599 Pfam WRKY DNA -binding domain 420 476 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc122236g00003 599 MobiDBLite consensus disorder prediction 1 49 - -
Stsc122236g00003 599 MobiDBLite consensus disorder prediction 373 388 - -
Stsc122236g00003 599 MobiDBLite consensus disorder prediction 335 388 - -
Stsc122236g00003 599 Gene3D WRKY domain 236 304 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc122236g00003 599 Gene3D WRKY domain 404 480 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc122236g00003 599 SUPERFAMILY WRKY DNA-binding domain 241 303 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc122236g00003 599 ProSiteProfiles WRKY domain profile. 414 479 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc122236g00003 599 SMART WRKY_cls 244 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc122236g00003 599 SMART WRKY_cls 419 478 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc122236g00003 599 MobiDBLite consensus disorder prediction 1 41 - -
Stsc122236g00003 599 SUPERFAMILY WRKY DNA-binding domain 411 479 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc122236g00003 599 FunFam WRKY transcription factor 33 406 472 - -
Stsc122236g00003 599 MobiDBLite consensus disorder prediction 519 539 - -
Stsc122236g00003 599 ProSiteProfiles WRKY domain profile. 239 303 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122236g00003 Stsc-Chr122236 8951 14819 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122236g00003 53 599 WRKY Transcription Factor Family AT4G26640 56.396 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc122236g00003 WRKY 1.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122236g00003 - - adu:107464084 1127.46