Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122236g00002 ATGCAAACATCTCAAGAAAAGGAACTTCCCTATGGCTCTGGCAGGTTCTACATTCAGCCTGCACAAAATCCAGAGTCAAACTGCTTTCCATCAAGTGAGAATCTAGAAAATGATTCCTCCTCTGATAACAGCAACCGCGCAACCTACCCGTTCGTCAAGACTTTGGATCCATATTGCACACTTGAATCTGCTTCAGCAAGTAATAATATCCCATGCCAAAATTCTCCATCTGCAGCCAATTTCTCACCTAAAGGGAGCTTGGTGTCGAAGCTAGAACCGAAACCACGTGTCTTGAGGCCACAACATTCTCTCGAAACTACTAATGGCTCTCCGGAGACAAATTCTTGCTTGACACATGACCTTGTTGATGATCTGAGGGATAAGATAAAAGAGCTGGAAACTGCTATGCTGGGACCTGATACAAATACACTAAATATGTATGATTTTGTAGTTCCGGAACCAGAAGAACCTGATTCCTTTTTGTTAGCAGCAGAGAAGTGGAGGAAAACAATGGAGATCATATCTAGAGGTGATTTGAAGGAGGTGCTTTATGCTTGTGCAAAATCGATGGCAGAGAACGACGTGGAGACTACTGACTGGCTGATTTCTGAGCTGCGAAAAATGGTTTCCATTTCGGGTGACCCTCTGCAGCGATTGGGAGCATACATGTTGGAGTCTCTTGTTGCAAGGATGGCTTCCACAGGAAGCAAAATCTATAAGGCCTTAAAATGCAGCGAGCCGACAGGTAACGAACTGCTTTCGTACATGCATGTACTTTATGAAATATGTCCATACTTCAAGTTCGGGTATATGTCGGCGAACGGAGCAATTGCCGAAGCTATGAAGGAAGAAAGTCGGGTTCACATAATTGATTTTCAGATTAGCCAGGGAACTCAGTGGGTAAGCCTAATGCAGGCTCTTGCTCGCCGACCGGGAGGACCTCCTTATATCAGAATTACAGCTGTTGATGACTCCTTTTCGGCTTATGCCCGGGGAGGGGGACTTGACATTGTAGGGAATAGGCTATCAGCACTTGCACAGTCTTGTAATGTACCTTTTGAGTTCCATGCTATCAGAGTTCCTGCTTCTGAGGTGCAACTAGAAGATCTTGAACTTCGAACTAATGAAGCTGTGGCAGTGAATTTCGCTATTATGCTGCACCATGTTCCGGATGAAAGTGTAAGCATTCATAATCCTCGCGACCGGTTGTTGAGATTGGCAAAGCACTTGTCTCCCAAGGTAGTGACTCTAGTTGAGCAAGAGTTTAGTACCAATAATGCTCGGTTCTTGCCACGTTTCGTGGAGACATTGAACTACTACCTGGCTGTTTTCGAATCGATCGATGTTGTTCTGCCAAGAGAGCACAAGGAGAGGATCAATGTTGAGCAGCACTGCTTAGCTCGAGAAATTGTCAACTTAGTAGCATGTGAAGGTGCAGAAAGAGTGGAAAGGCACGAGCTTCTGAACAAGTGGAGGCGGCGTTTCGCCGTGGCTGGATTTACGCCTTATCCGCTGAGCTCCTTTGTTAATGCTTCAATCAAGACCCTTTTGGAGAGCTACCCTGGACATTACACTCTAGAAGAGAGAGATGGCACACTTTACCTTGGTTGGATGAATCAGGTTCTTGTTGTCTCTTGTGCTTGGAGATGA 1650 0.4545 MQTSQEKELPYGSGRFYIQPAQNPESNCFPSSENLENDSSSDNSNRATYPFVKTLDPYCTLESASASNNIPCQNSPSAANFSPKGSLVSKLEPKPRVLRPQHSLETTNGSPETNSCLTHDLVDDLRDKIKELETAMLGPDTNTLNMYDFVVPEPEEPDSFLLAAEKWRKTMEIISRGDLKEVLYACAKSMAENDVETTDWLISELRKMVSISGDPLQRLGAYMLESLVARMASTGSKIYKALKCSEPTGNELLSYMHVLYEICPYFKFGYMSANGAIAEAMKEESRVHIIDFQISQGTQWVSLMQALARRPGGPPYIRITAVDDSFSAYARGGGLDIVGNRLSALAQSCNVPFEFHAIRVPASEVQLEDLELRTNEAVAVNFAIMLHHVPDESVSIHNPRDRLLRLAKHLSPKVVTLVEQEFSTNNARFLPRFVETLNYYLAVFESIDVVLPREHKERINVEQHCLAREIVNLVACEGAERVERHELLNKWRRRFAVAGFTPYPLSSFVNASIKTLLESYPGHYTLEERDGTLYLGWMNQVLVVSCAWR 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122236g00002 549 MobiDBLite consensus disorder prediction 75 96 - -
Stsc122236g00002 549 MobiDBLite consensus disorder prediction 19 47 - -
Stsc122236g00002 549 ProSiteProfiles GRAS family profile. 170 549 IPR005202 -
Stsc122236g00002 549 MobiDBLite consensus disorder prediction 1 47 - -
Stsc122236g00002 549 Pfam GRAS domain family 179 549 IPR005202 -
Stsc122236g00002 549 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 128 542 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122236g00002 Stsc-Chr122236 5348 7270 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122236g00002 1 549 GRAS Transcription Factor Family AT1G50600 56.600 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc122236g00002 GRAS 2.9e-133 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122236g00002 - - gmx:100785400 832.017